Evidence map›Paper›PMID 18674748›Full record

ArticleAmerican journal of human genetics2008

ATM gene mutations result in both recessive and dominant expression phenotypes of genes and microRNAs.

Denis A Smirnov, Vivian G Cheung

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 50 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Inflammation, a significant player of Ataxia-Telangiectasia pathogenesis?Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2018
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Pro-oxidant induced DNA damage in human lymphoblastoid cells: homeostatic mechanisms of genotoxic tolerance.Toxicological sciences : an official journal of the Society of Toxicology · 2012
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Denis A SmirnovDepartments of Pediatrics and Genetics, Howard Hughes Medical Institute, University of Pennsylvania, Philadelphia, PA 19104, USA.
Vivian G Cheung
Pediatrics and Genetics · USUniversity of Pennsylvania · US

Funding

Gene Expression Phenotype in Autosomal Recessive DiseaseR01GM070540 · NIGMS · CHILDREN'S HOSP OF PHILADELPHIA · PI CHEUNG, VIVIAN G · 2004 to 2007
$1.0M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM070540
6 · The paper itself

Abstract

The defining characteristic of recessive disorders is the absence of disease in heterozygous carriers of the mutant alleles. However, it has been recognized that recessive carriers may differ from noncarriers in some phenotypes. Here, we studied ataxia telangiectasia (AT), a classical recessive disorder caused by mutations in the ataxia telangiectasia mutated (ATM) gene. We compared the gene and microRNA expression phenotypes of noncarriers, AT carriers who have one copy of the ATM mutations, and AT patients with two copies of ATM mutations. We found that some phenotypes are more similar between noncarriers and AT carriers compared to AT patients, as expected for a recessive disorder. However, for some expression phenotypes, AT carriers are more similar to the patients than to the noncarriers. Analysis of one of these expression phenotypes, TNFSF4 level, allowed us to uncover a regulatory pathway where ATM regulates TNFSF4 expression through MIRN125B (also known as miR-125b or miR125b) [corrected] In AT carriers and AT patients, this pathway is disrupted. As a result, the level of MIRN125B is lower and the level of its target gene, TNFSF4, is higher than in noncarriers. A decreased level of MIRN125B is associated with breast cancer, and an elevated level of TNFSF4 is associated with atherosclerosis. Thus, our findings provide a mechanistic suggestion for the increased risk of breast cancer and heart disease in AT carriers. By integrating molecular and computational analyses of gene and microRNA expression, we show the complex consequences of a human gene mutation.

Indexed as

Gene Expression RegulationGenes, DominantMutationAtaxia Telangiectasia Mutated ProteinsCDX2 Transcription FactorCell Cycle ProteinsComputational BiologyDNA-Binding ProteinsEnzyme-Linked Immunosorbent AssayGene Expression ProfilingGenes, RecessiveHeterozygoteHomeodomain ProteinsHumansMicroRNAsOX40 LigandAtaxia Telangiectasia Mutated ProteinsATM protein, humanCDX2 protein, humanCDX2 Transcription FactorCell Cycle ProteinsDNA-Binding ProteinsHomeodomain ProteinsMicroRNAsMIRN125 microRNA, humanOX40 LigandProtein Serine-Threonine KinasesTNFSF4 protein, humanTumor Suppressor Proteins

Identifiers

PMID18674748
PMCPMC2495067
OpenAlexW2162341356

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.