Evidence map›Paper›PMID 18667559›Full record

ArticleMicrobiology (Reading, England)2008

agr function in clinical Staphylococcus aureus isolates.

Katrina E Traber, Elsie Lee, Sarah Benson, Rebecca Corrigan, Mariela Cantera, Bo Shopsin, Richard P Novick

Abstract read
In one paragraph

Article in Microbiology (Reading, England), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 225 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
225citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

225 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
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  10. Preparation of silibinin- dendrimer-stabilized Au nanoparticles for decreasing vancomycin resistance in S. aureus clinical isolates.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Article
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  14. Intracellular survival ofVirulence · 2025
    Review
  15. Article
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  18. Calprotectin protectsmSystems · 2025
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  19. Journal of bacteriology · 2025
    Article
  20. Cell surface (Amsterdam, Netherlands) · 2025
    Review

165 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Katrina E TraberMolecular Pathogenesis Program and Department of Microbiology and Medicine, Helen L. and Martin S. Kimmel Center for Biology and Medicine at the Skirball Institute for Biomolecular Medicine, New York University School of Medicine, 540 First Avenue, NY 10016, USA.
Elsie LeeMolecular Pathogenesis Program and Department of Microbiology and Medicine, Helen L. and Martin S. Kimmel Center for Biology and Medicine at the Skirball Institute for Biomolecular Medicine, New York University School of Medicine, 540 First Avenue, NY 10016, USA.
Sarah BensonNew York University School of Medicine, NY 10016, USA.
Rebecca CorriganTrinity College, University of Dublin, Dublin 2, Ireland.
Mariela CanteraNew York University School of Medicine, NY 10016, USA.
Bo ShopsinDivision of Infectious Diseases, Department of Medicine, New York University School of Medicine, NY 10016, USA.
Richard P NovickMolecular Pathogenesis Program and Department of Microbiology and Medicine, Helen L. and Martin S. Kimmel Center for Biology and Medicine at the Skirball Institute for Biomolecular Medicine, New York University School of Medicine, 540 First Avenue, NY 10016, USA.

Funding

MEDICAL SCIENTIST TRAININGT32GM007308 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PHILIPS, MARK REID · 1985 to 2019
$23.2M
NIGMS NIH HHS T32 GM007308
6 · The paper itself

Abstract

The accessory gene regulator (agr) of Staphylococcus aureus is a global regulator of the staphylococcal virulon, which includes secreted virulence factors and surface proteins. The agr locus is important for virulence in a variety of animal models of infection, and has been assumed by inference to have a major role in human infection. Although most human clinical S. aureus isolates are agr(+), there have been several reports of agr-defective mutants isolated from infected patients. Since it is well known that the agr locus is genetically labile in vitro, we have addressed the question of whether the reported agr-defective mutants were involved in the infection or could have arisen during post-isolation handling. We obtained a series of new staphylococcal isolates from local clinical infections and handled these with special care to avoid post-isolation mutations. Among these isolates, we found a number of strains with non-haemolytic phenotypes owing to mutations in the agr locus, and others with mutations elsewhere. We have also obtained isolates in which the population was continuously heterogeneous with respect to agr functionality, with agr(+) and agr(-) variants having otherwise indistinguishable chromosomal backgrounds. This finding suggested that the agr(-) variants arose by mutation during the course of the infection. Our results indicate that while most clinical isolates are haemolytic and agr(+), non-haemolytic and agr(-) strains are found in S. aureus infections, and that agr(+) and agr(-) variants may have a cooperative interaction in certain types of infections.

Indexed as

Amino Acid SequenceBacterial ProteinsBacterial Typing TechniquesBase SequenceGenotypeHemolysin ProteinsHumansMolecular Sequence DataMutationStaphylococcal InfectionsStaphylococcus aureusTrans-ActivatorsTranscription, GeneticAgr protein, Staphylococcus aureusBacterial ProteinsHemolysin ProteinsTrans-Activators

Identifiers

PMID18667559
PMCPMC4904715

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.