Evidence map›Paper›PMID 18664616›Full record

ArticleThe Plant cell2008

XopD SUMO protease affects host transcription, promotes pathogen growth, and delays symptom development in xanthomonas-infected tomato leaves.

Jung-Gun Kim, Kyle W Taylor, Andrew Hotson, Mark Keegan, Eric A Schmelz, Mary Beth Mudgett

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed, 1 pooled it
17.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 1 synthesis or guideline pooled it, 160 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Identification of candidate nucleomodulins in ESKAPE bacteria -Frontiers in cellular and infection microbiology · 2026
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  9. Frontiers in microbiology · 2023
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  10. Review
  11. Article
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  14. Identification of Genes inPlants (Basel, Switzerland) · 2022
    Article
  15. Review
  16. Review
  17. Review
  18. Article
  19. Review
  20. Review

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jung-Gun KimDepartment of Biology, Stanford University, Stanford, California 94305, USA.
Kyle W Taylor
Andrew Hotson
Mark Keegan
Eric A Schmelz
Mary Beth Mudgett
Stanford University · USAgricultural Research Service · US

Funding

Dissection of AvrBsT-BST defense pathway in ArabidopsisR01GM068886 · NIGMS · STANFORD UNIVERSITY · PI MUDGETT, MARY BETH · 2004 to 2013
$2.6M
NIGMS NIH HHS 1R01 GM-068886NIGMS NIH HHS R01 GM068886
6 · The paper itself

Abstract

We demonstrate that XopD, a type III effector from Xanthomonas campestris pathovar vesicatoria (Xcv), suppresses symptom production during the late stages of infection in susceptible tomato (Solanum lycopersicum) leaves. XopD-dependent delay of tissue degeneration correlates with reduced chlorophyll loss, reduced salicylic acid levels, and changes in the mRNA abundance of senescence- and defense-associated genes despite high pathogen titers. Subsequent structure-function analyses led to the discovery that XopD is a DNA binding protein that alters host transcription. XopD contains a putative helix-loop-helix domain required for DNA binding and two conserved ERF-associated amphiphilic motifs required to repress salicylic acid- and jasmonic acid-induced gene transcription in planta. Taken together, these data reveal that XopD is a unique virulence factor in Xcv that alters host transcription, promotes pathogen multiplication, and delays the onset of leaf chlorosis and necrosis.

Indexed as

Bacterial ProteinsChlorophyllDNA-Binding ProteinsGene Expression Regulation, PlantHost-Pathogen InteractionsImmunoblottingMolecular Sequence DataMutagenesis, Site-DirectedPlant DiseasesPlant LeavesReverse Transcriptase Polymerase Chain ReactionSalicylic AcidSolanum lycopersicumTranscription, GeneticXanthomonasBacterial ProteinsChlorophyllDNA-Binding ProteinsSalicylic Acid

Identifiers

PMID18664616
PMCPMC2518228
OpenAlexW2097383762

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.