Evidence map›Paper›PMID 18661123›Full record

ArticleAnalytical and bioanalytical chemistry2008

Quantitative evaluation of oligonucleotide surface concentrations using polymerization-based amplification.

Ryan R Hansen, Heather J Avens, Raveesh Shenoy, Christopher N Bowman

Abstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Sensitive immunofluorescent staining of cells via generation of fluorescent nanoscale polymer films in response to biorecognition.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2011
    Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ryan R HansenDepartment of Chemical and Biological Engineering, ECCH 111 CB 424, University of Colorado, Boulder, CO 80309, USA.
Heather J Avens
Raveesh Shenoy
Christopher N Bowman

Funding

High Amplification Detection of Genetic Cancer MarkersR21CA127884 · NCI · UNIVERSITY OF COLORADO · PI BOWMAN, CHRISTOPHER N · 2008 to 2009
$367k
NCI NIH HHS 1R21 CA 127884NCI NIH HHS R21 CA127884
6 · The paper itself

Abstract

Quantitative evaluation of minimal polynucleotide concentrations has become a critical analysis among a myriad of applications found in molecular diagnostic technology. Development of high-throughput, nonenzymatic assays that are sensitive, quantitative and yet feasible for point-of-care testing are thus beneficial for routine implementation. Here, we develop a nonenzymatic method for quantifying surface concentrations of labeled DNA targets by coupling regulated amounts of polymer growth to complementary biomolecular binding on array-based biochips. Polymer film thickness measurements in the 20-220 nm range vary logarithmically with labeled DNA surface concentrations over two orders of magnitude with a lower limit of quantitation at 60 molecules/microm(2) (approximately 10(6) target molecules). In an effort to develop this amplification method towards compatibility with fluorescence-based methods of characterization, incorporation of fluorescent nanoparticles into the polymer films is also evaluated. The resulting gains in fluorescent signal enable quantification using detection instrumentation amenable to point-of-care settings.

Indexed as

Binding, CompetitiveBiotinDNADye Dilution TechniqueEosine Yellowish-(YS)Fluorescent DyesKineticsMicroscopy, FluorescenceNanoparticlesOligonucleotide Array Sequence AnalysisOligonucleotidesStreptavidinSurface PropertiesBiotinDNAeosine-5-isothiocyanateEosine Yellowish-(YS)Fluorescent DyesOligonucleotidesStreptavidin

Identifiers

PMID18661123
PMCPMC2517095

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.