Evidence map›Paper›PMID 18660816›Full record

ArticleNature medicine2008

Hepatocyte-specific ablation of Foxa2 alters bile acid homeostasis and results in endoplasmic reticulum stress.

Irina M Bochkis, Nir E Rubins, Peter White, Emma E Furth, Joshua R Friedman, Klaus H Kaestner

Open access · greenAbstract read
In one paragraph

Article in Nature medicine, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed, 2 pooled it
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed, 2 syntheses or guidelines pooled it, 188 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Review
  6. Article
  7. Role of HNF6 in liver homeostasis and pathophysiology.Molecular medicine (Cambridge, Mass.) · 2025
    Review
  8. Article
  9. Article
  10. Knockouts ofiScience · 2024
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Time-of-day defines NADNature communications · 2023
    Article
  20. Iranian journal of public health · 2023
    Article

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Irina M BochkisDepartment of Genetics and Institute for Diabetes, Obesity and Metabolism, University of Pennsylvania School of Medicine, 415 Curie Boulevard, Philadelphia, Pennsylvania 19104, USA.
Nir E Rubins
Peter White
Emma E Furth
Joshua R Friedman
Klaus H Kaestner
University of Pennsylvania · USChildren's Hospital of Philadelphia · US

Funding

VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MITCHELL A. LAZAR · 1986 to 2026
$48.3M
ZINC FINGER PROTEINS IN EARLY KIDNEY DEVELOPMENTP01DK049210 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI AHIMA, REXFORD S. · 1995 to 2016
$26.9M
FUNCTIONAL GENOMICS OF THE BETA-CELLU01DK056947 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI KAESTNER, KLAUS H. · 2002 to 2007
$10.7M
Training Program in Computational GenomicsT32HG000046 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI JUNHYONG KIM, Mingyao Li · 1999 to 2026
$9.5M
FUNCTIONAL GENOMICS OF THE DEVELOPING ENDOCRINE PANCREASR24DK056947 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI KAESTNER, KLAUS H. · 1999 to 2001
$3.2M
NHGRI NIH HHS T32 HG000046NHGRI NIH HHS T32-HG000046NIDDK NIH HHS DK-049210NIDDK NIH HHS DK-056947NIDDK NIH HHS P01 DK049210NIDDK NIH HHS P30 DK019525NIDDK NIH HHS P30DK19525NIDDK NIH HHS R24 DK056947NIDDK NIH HHS U01 DK056947
6 · The paper itself

Abstract

Production of bile by the liver is crucial for the absorption of lipophilic nutrients. Dysregulation of bile acid homeostasis can lead to cholestatic liver disease and endoplasmic reticulum (ER) stress. We show by global location analysis ('ChIP-on-chip') and cell type-specific gene ablation that the winged helix transcription factor Foxa2 is required for normal bile acid homeostasis. As suggested by the location analysis, deletion of Foxa2 in hepatocytes in mice using the Cre-lox system leads to decreased transcription of genes encoding bile acid transporters on both the basolateral and canalicular membranes, resulting in intrahepatic cholestasis. Foxa2-deficient mice are strikingly sensitive to a diet containing cholic acid, which results in toxic accumulation of hepatic bile salts, ER stress and liver injury. In addition, we show that expression of FOXA2 is markedly decreased in liver samples from individuals with different cholestatic syndromes, suggesting that reduced FOXA2 abundance could exacerbate the injury.

Indexed as

Gene Expression RegulationAnimalsBile Acids and SaltsCholestasis, IntrahepaticEndoplasmic ReticulumGene DeletionGene Expression ProfilingGlutathioneHepatocyte Nuclear Factor 3-betaHepatocytesHomeostasisHumansLiverMiceBile Acids and SaltsFOXA2 protein, humanFoxa2 protein, mouseGlutathioneHepatocyte Nuclear Factor 3-beta

Identifiers

PMID18660816
PMCPMC4095974
OpenAlexW2013256245

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.