Evidence map›Paper›PMID 18658266›Full record

ArticleJournal of bacteriology2008

Identification of functional Tat signal sequences in Mycobacterium tuberculosis proteins.

Justin A McDonough, Jessica R McCann, Erin McElvania Tekippe, Jason S Silverman, Nathan W Rigel, Miriam Braunstein

Abstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The roles of highly conserved, non-catalytic residues in class A β-lactamases.Protein science : a publication of the Protein Society · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Microorganisms · 2021
    Article
  10. Engineering a new vaccine platform for heterologous antigen delivery in live-attenuatedComputational and structural biotechnology journal · 2021
    Article
  11. ATP-binding cassette (ABC) import systems ofEmerging microbes & infections · 2020
    Review
  12. Review
  13. Article
  14. Arginine-deprivation-induced oxidative damage sterilizesProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  15. Article
  16. Article
  17. Imaging mycobacterial growth and division with a fluorogenic probe.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Justin A McDonoughDepartment of Microbiology and Immunology, University of North Carolina, Chapel Hill, NC 27599-7290, USA.
Jessica R McCann
Erin McElvania Tekippe
Jason S Silverman
Nathan W Rigel
Miriam Braunstein
University of North Carolina at Chapel Hill · US

Funding

Virology, Immunology, and Microbiology CoreP30AI050410 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2001 to 2026
$76.9M
Training in Sexually Transmitted Infections and HIVT32AI007001 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SENA-SOBERANO, ARLENE C. · 1985 to 2025
$10.9M
Protein Secretion Pathways of Mycobacterium tuberculosisR01AI054540 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BRAUNSTEIN, MIRIAM S. · 2004 to 2013
$2.7M
CELL &MOLECULAR BIOLOGY TRAINING PROGRAMT32GM008581 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI COX, ADRIENNE D · 1996 to 2008
$1.3M
NIAID NIH HHS 5T32 AI07001-28NIAID NIH HHS 9P30 AI50410-04NIAID NIH HHS P30 AI050410NIAID NIH HHS R01 AI054540NIAID NIH HHS T32 AI007001NIGMS NIH HHS 5-T32-GM008581NIGMS NIH HHS T32 GM008581
6 · The paper itself

Abstract

The twin-arginine translocation (Tat) pathway is a system used by some bacteria to export proteins out from the cytosol to the cell surface or extracellular environment. A functional Tat pathway exists in the important human pathogen Mycobacterium tuberculosis. Identification of the substrates exported by the Tat pathway can help define the role that this pathway plays in the physiology and pathogenesis of M. tuberculosis. Here we used a reporter of Tat export, a truncated beta-lactamase, 'BlaC, to experimentally identify M. tuberculosis proteins with functional Tat signal sequences. Of the 13 proteins identified, one lacks the hallmark of a Tat-exported substrate, the twin-arginine dipeptide, and another is not predicted by in silico analysis of the annotated M. tuberculosis genome. Full-length versions of a subset of these proteins were tested to determine if the native proteins are Tat exported. For three proteins, expression in a Deltatat mutant of Mycobacterium smegmatis revealed a defect in precursor processing compared to expression in the wild type, indicating Tat export of the full-length proteins. Conversely, two proteins showed no obvious Tat export in M. smegmatis. One of this latter group of proteins was the M. tuberculosis virulence factor phospholipase C (PlcB). Importantly, when tested in M. tuberculosis a different result was obtained and PlcB was exported in a twin-arginine-dependent manner. This suggests the existence of an M. tuberculosis-specific factor(s) for Tat export of a proven virulence protein. It also emphasizes the importance of domains beyond the Tat signal sequence and bacterium-specific factors in determining if a given protein is Tat exported.

Indexed as

ArginineBacterial ProteinsImmunoblottingMembrane Transport ProteinsModels, GeneticMycobacterium tuberculosisOpen Reading FramesPlasmidsProtein TransportSignal TransductionType C PhospholipasesArginineBacterial ProteinsMembrane Transport ProteinsMpcB protein, Mycobacterium tuberculosisType C Phospholipases

Identifiers

PMID18658266
PMCPMC2566002
OpenAlexW2169673506

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.