Evidence map›Paper›PMID 18658152›Full record

ArticleThe Journal of biological chemistry2008

Roles for loop 2 residues of alpha1 glycine receptors in agonist activation.

Daniel K Crawford, Daya I Perkins, James R Trudell, Edward J Bertaccini, Daryl L Davies, Ronald L Alkana

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Zinc-dependent modulation of α2- and α3-glycine receptor subunits by ethanol.Alcoholism, clinical and experimental research · 2013
    Article
  7. Article
  8. Article
  9. Article
  10. Allosteric modulation of glycine receptors.British journal of pharmacology · 2011
    Review
  11. Article
  12. Review
  13. Gating mechanisms in Cys-loop receptors.European biophysics journal : EBJ · 2009
    Review
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Daniel K CrawfordAlcohol and Brain Research Laboratory, Department of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, Los Angeles, California 90089; Neuroscience Graduate Program, University of Southern California, Los Angeles, California 90089.
Daya I PerkinsAlcohol and Brain Research Laboratory, Department of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, Los Angeles, California 90089.
James R TrudellDepartment of Anesthesia and Beckman Program for Molecular and Genetic Medicine, Stanford School of Medicine, Stanford, California 94305.
Edward J BertacciniDepartment of Anesthesia and Beckman Program for Molecular and Genetic Medicine, Stanford School of Medicine, Stanford, California 94305; Department of Anesthesia, Palo Alto Veterans Affairs Health Care System, Palo Alto, California 94304.
Daryl L DaviesAlcohol and Brain Research Laboratory, Department of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, Los Angeles, California 90089. Electronic address: ddavies@usc.edu.
Ronald L AlkanaAlcohol and Brain Research Laboratory, Department of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, Los Angeles, California 90089; Neuroscience Graduate Program, University of Southern California, Los Angeles, California 90089.
Stanford Medicine · USUniversity of Southern California · US

Funding

LOW LEVEL HYPERBARIC ETHANOL ANTAGONISMR01AA003972 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ALKANA, RONALD L · 1985 to 2009
$2.7M
Properties of Specific Alcohol Binding SitesR01AA013378 · NIAAA · STANFORD UNIVERSITY · PI TRUDELL, JAMES ROBERT · 2002 to 2009
$1.9M
Sites /Mechanisms of Ethanol Action in P2X receptorsR01AA013922 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DAVIES, DARYL L · 2004 to 2009
$1.7M
Pressure-Based Pharmacological Alcoholism TreatmentsR21AA013890 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DAVIES, DARYL L · 2003 to 2005
$488k
NIAAA NIH HHS AA013378NIAAA NIH HHS AA013890NIAAA NIH HHS AA013922NIAAA NIH HHS AA03972
6 · The paper itself

Abstract

The present study tested the hypothesis that several residues in Loop 2 of alpha1 glycine receptors (GlyRs) play important roles in mediating the transduction of agonist activation to channel gating. This was accomplished by investigating the effect of cysteine point mutations at positions 50-60 on glycine responses in alpha1GlyRs using two-electrode voltage clamp of Xenopus oocytes. Cysteine substitutions produced position-specific changes in glycine sensitivity that were consistent with a beta-turn structure of Loop 2, with odd-numbered residues in the beta-turn interacting with other agonist-activation elements at the interface between extracellular and transmembrane domains. We also tested the hypothesis that the charge at position 53 is important for agonist activation by measuring the glycine response of wild type (WT) and E53C GlyRs exposed to methanethiosulfonate reagents. As earlier, E53C GlyRs have a significantly higher EC(50) than WT GlyRs. Exposing E53C GlyRs to the negatively charged 2-sulfonatoethyl methanethiosulfonate, but not neutral 2-hydroxyethyl methanethiosulfonate, positively charged 2-aminoethyl methanethiosulfonate, or 2-trimethylammonioethyl methanethiosulfonate, decreased the glycine EC(50) to resemble WT GlyR responses. Exposure to these reagents did not significantly alter the glycine EC(50) for WT GlyRs. The latter findings suggest that the negative charge at position 53 is important for activation of GlyRs through its interaction with positive charge(s) in other neighboring agonist activation elements. Collectively, the findings provide the basis for a refined molecular model of alpha1GlyRs based on the recent x-ray structure of a prokaryotic pentameric ligand-gated ion channel and offer insight into the structure-function relationships in GlyRs and possibly other ligand-gated ion channels.

Indexed as

Models, MolecularAmino Acid SubstitutionAnimalsFemaleHumansIon Channel GatingOocytesPoint MutationProtein Structure, SecondaryProtein Structure, TertiaryReceptors, GlycineXenopus laevisReceptors, Glycine

Identifiers

PMID18658152
PMCPMC2562068
OpenAlexW1985326569

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.