Evidence map›Paper›PMID 18658147›Full record

ArticleThe Journal of biological chemistry2008

Oligomeric structure and minimal functional unit of the electrogenic sodium bicarbonate cotransporter NBCe1-A.

Liyo Kao, Pakan Sassani, Rustam Azimov, Alexander Pushkin, Natalia Abuladze, Janos Peti-Peterdi, Weixin Liu, Debra Newman, Ira Kurtz

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Biallelic variants in SLC4A10 encoding a sodium-dependent bicarbonate transporter lead to a neurodevelopmental disorder.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
    Article
  6. Article
  7. Article
  8. Hidden Relationships betweenInternational journal of molecular sciences · 2022
    Review
  9. Article
  10. Article
  11. Article
  12. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Liyo KaoDivision of Nephrology, David Geffen School Medicine, UCLA, Los Angeles, California 90095-1689, USA.
Pakan Sassani
Rustam Azimov
Alexander Pushkin
Natalia Abuladze
Janos Peti-Peterdi
Weixin Liu
Debra Newman
Ira Kurtz

Funding

Multiphoton Imaging of the Juxtaglomerular ApparatusR01DK064324 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI JANOS PETI-PETERDI · 2004 to 2026
$8.4M
The Biology of NBCe1 in Health and DiseaseR01DK077162 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI IRA KURTZ · 2007 to 2026
$6.7M
BIOLOGY OF SODIUM BICARBONATE TRANSPORTR01DK058563 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KURTZ, IRA · 2001 to 2011
$3.1M
Modulation of Electrogenic Sodium Bicarbonate TransportR01DK063125 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KURTZ, IRA · 2003 to 2007
$1.8M
Biology of Mercapturic Acid Mediated NephrotoxicityR01ES012935 · NIEHS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PUSHKIN, ALEXANDER · 2005 to 2009
$1.8M
Renin activation in early diabetesR01DK074754 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI PETI-PETERDI, JANOS · 2007 to 2009
$724k
NIDDK NIH HHS DK058563NIDDK NIH HHS DK063125NIDDK NIH HHS DK077162NIDDK NIH HHS DK64324NIDDK NIH HHS DK74754NIDDK NIH HHS R01 DK058563NIDDK NIH HHS R01 DK063125NIDDK NIH HHS R01 DK064324NIDDK NIH HHS R01 DK074754NIDDK NIH HHS R01 DK077162NIEHS NIH HHS ES12935NIEHS NIH HHS R01 ES012935
6 · The paper itself

Abstract

The electrogenic sodium bicarbonate cotransporter NBCe1-A mediates the basolateral absorption of sodium and bicarbonate in the proximal tubule. In this study the oligomeric state and minimal functional unit of NBCe1-A were investigated. Wild-type (wt) NBCe1-A isolated from mouse kidney or heterologously expressed in HEK293 cells was predominantly in a dimeric state as was shown using fluorescence energy transfer, pulldown, immunoprecipitation, cross-linking experiments, and nondenaturing perfluorooctanoate-PAGE. NBCe1-A monomers were found to be covalently linked by S-S bonds. When each of the 15 native cysteine residues were individually removed on a wt-NBCe1-A backbone, dimerization of the cotransporter was not affected. In experiments involving multiple native cysteine residue removal, both Cys(630) and Cys(642) in extracellular loop 3 were shown to mediate S-S bond formation between NBCe1-A monomers. When native NBCe1-A cysteine residues were individually reintroduced into a cysteineless NBCe1-A mutant backbone, the finding that a Cys(992) construct that lacked S-S bonds functioned normally indicated that stable covalent linkage of NBCe1-A monomers was not a necessary requirement for functional activity of the cotransporter. Studies using concatameric constructs of wt-NBCe1-A, whose activity is resistant to methanesulfonate reagents, and an NBCe1-A(T442C) mutant, whose activity is completely inhibited by methanesulfonate reagents, confirmed that NBCe1-A monomers are functional. Our results demonstrate that wt-NBCe1-A is predominantly a homodimer, dependent on S-S bond formation that is composed of functionally active monomers.

Indexed as

Amino Acid SubstitutionAnimalsCell LineDimerizationHumansMutation, MissenseProtein Structure, QuaternaryProtein Structure, SecondaryRecombinant ProteinsSodium-Bicarbonate SymportersRecombinant ProteinsSlc4a4 protein, mouseSodium-Bicarbonate Symporters

Identifiers

PMID18658147
PMCPMC2546552

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.