Evidence map›Paper›PMID 18656261›Full record

ArticleJournal of inorganic biochemistry2008

Spectroscopic studies on Arabidopsis ETHE1, a glyoxalase II-like protein.

Meghan M Holdorf, Brian Bennett, Michael W Crowder, Christopher A Makaroff

Abstract read
In one paragraph

Article in Journal of inorganic biochemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Chemical Biology of HChemical reviews · 2018
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Altered sulfide (H(2)S) metabolism in ethylmalonic encephalopathy.Cold Spring Harbor perspectives in biology · 2013
    Review
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Meghan M HoldorfDepartment of Chemistry and Biochemistry, Miami University, Oxford, OH 45056, United States.
Brian Bennett
Michael W Crowder
Christopher A Makaroff
Miami University · USMedical College of Wisconsin · US

Funding

TR&D Project 3P41EB001980 · NIBIB · MEDICAL COLLEGE OF WISCONSIN · PI KLUG, CANDICE S · 2003 to 2017
$16.3M
Substrate &Inhibitor Binding in Leucine AminopeptidaseR01AI056231 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI BENNETT, BRIAN · 2003 to 2007
$923k
METALLO BETA LACTAMASE FROM X MALTOPHILIAR29AI040052 · NIAID · MIAMI UNIVERSITY OXFORD · PI CROWDER, MICHAEL W · 1998 to 2002
$273k
Arabidopsis AtETHE1, A model to understand the metabolic role of ETHE1R15GM076199 · NIGMS · MIAMI UNIVERSITY OXFORD · PI MAKAROFF, CHRISTOPHER A · 2008 to 2008
$213k
CONFORMATION OF AMIDE SUBSTITUTED SUGARSR15GM040052 · NIGMS · CARLETON COLLEGE · PI BUFFINGTON, LYNN A · 1988 to 1988
–
NIAID NIH HHS AI056231NIAID NIH HHS R01 AI056231NIAID NIH HHS R29 AI040052NIBIB NIH HHS EB001980NIBIB NIH HHS P41 EB001980NIGMS NIH HHS GM40052NIGMS NIH HHS R15 GM076199
6 · The paper itself

Abstract

ETHE1 (ethylmalonic encephalopathy protein 1) is a beta-lactamase fold-containing protein that is essential for the survival of a range of organisms. In spite of the apparent importance of this enzyme, very little is known about its function or biochemical properties. In this study Arabidopsis ETHE1 was over-expressed and purified and shown to bind tightly to 1.2+/-0.2 equivalents of iron. (1)H NMR and EPR studies demonstrate that the predominant oxidation state of Fe in ETHE1 is Fe(II), and NMR studies confirm that two histidines are bound to Fe(II). EPR studies show that there is no antiferromagnetically coupled Fe(III)Fe(II) center in ETHE1. Gel filtration studies reveal that ETHE1 is a dimer in solution, which is consistent with previous crystallographic studies. Although very similar in terms of amino acid sequence to glyoxalase II, ETHE1 exhibits no thioester hydrolase activity, and activity screening assays reveal that ETHE1 exhibits low level esterase activity. Taken together, ETHE1 is a novel, mononuclear Fe(II)-containing member of the beta-lactamase fold superfamily.

Indexed as

ArabidopsisArabidopsis ProteinsDimerizationElectron Spin Resonance SpectroscopyFerrous CompoundsHydroxyacylglutathione HydrolaseIronMagnetic Resonance SpectroscopyManganeseOxidation-ReductionProtein BindingThiolester HydrolasesZincArabidopsis ProteinsFerrous CompoundsHydroxyacylglutathione HydrolaseIronManganeseThiolester HydrolasesZinc

Identifiers

PMID18656261
PMCPMC2556177
OpenAlexW2088838477

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.