Evidence map›Paper›PMID 18653525›Full record

ArticleNucleic acids research2008

DNA repair of clustered lesions in mammalian cells: involvement of non-homologous end-joining.

Svitlana Malyarchuk, Reneau Castore, Lynn Harrison

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Review
  3. A perspective on tumor radiation resistance following high-LET radiation treatment.Journal of cancer research and clinical oncology · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Svitlana MalyarchukDepartment of Molecular and Cellular Physiology, Louisiana Health Sciences Center, Shreveport, LA 71130, USA.
Reneau Castore
Lynn Harrison
Louisiana State University Health Sciences Center Shreveport · US

Funding

DNA REPAIR OF MULTIPLY DAMAGED SITES IN CELLSR01CA085693 · NCI · LOUISIANA STATE UNIV HSC SHREVEPORT · PI HARRISON, LYNN · 2000 to 2010
$2.4M
NCI NIH HHS CA 85693NCI NIH HHS R01 CA085693
6 · The paper itself

Abstract

Clustered lesions are defined as >or=two lesions within 20 bps and are generated in DNA by ionizing radiation. In vitro studies and work in bacteria have shown that attempted repair of two closely opposed lesions can result in the formation of double strand breaks (DSBs). Since mammalian cells can repair DSBs by non-homologous end-joining (NHEJ), we hypothesized that NHEJ would repair DSBs formed during the removal of clustered tetrahydrofurans (furans). However, two opposing furans situated 2, 5 or 12 bps apart in a firefly luciferase reporter plasmid caused a decrease in luciferase activity in wild-type, Ku80 or DNA-PKcs-deficient cells, indicating the generation of DSBs. Loss of luciferase activity was maximal at 5 bps apart and studies using siRNA implicate the major AP endonuclease in the initial cleavage. Since NHEJ-deficient cells had equivalent luciferase activity to their isogenic wild-type cells, NHEJ was not involved in accurate repair of clustered lesions. However, quantitation and examination of re-isolated DNA showed that damage-containing plasmids were inaccurately repaired by Ku80-dependent, as well as Ku80-independent mechanisms. This work indicates that not even NHEJ can completely prevent the conversion of clustered lesions to potentially lethal DSBs, so demonstrating the biological relevance of ionizing radiation-induced clustered damage.

Indexed as

DNA Breaks, Double-StrandedDNA RepairAnimalsAntigens, NuclearCell LineDNA-(Apurinic or Apyrimidinic Site) LyaseDNA-Binding ProteinsFuransGene DeletionGenes, ReporterKu AutoantigenLuciferases, FireflyMicePlasmidsRNA InterferenceAntigens, NuclearApex1 protein, mouseDNA-(Apurinic or Apyrimidinic Site) LyaseDNA-Binding ProteinsFuransKu AutoantigenLuciferases, FireflytetrahydrofuranXrcc6 protein, mouse

Identifiers

PMID18653525
PMCPMC2528178
OpenAlexW2119067824

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.