Evidence map›Paper›PMID 18650347›Full record

ArticleJournal of clinical microbiology2008

Phylogenetic analysis of viridans group streptococci causing endocarditis.

Keith E Simmon, Lori Hall, Christopher W Woods, Francesc Marco, Jose M Miro, Christopher Cabell, Bruno Hoen, Mercedes Marin, Riccardo Utili, Efthymia Giannitsioti and 17 more

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Review
  5. Accurate Differentiation ofFrontiers in microbiology · 2017
    Article
  6. Infective endocarditis.Nature reviews. Disease primers · 2016
    Review
  7. Clinical presentation of infective endocarditis caused by different groups of non-beta haemolytic streptococci.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2016
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Molecular methods for pathogen and microbial community detection and characterization: current and potential application in diagnostic microbiology.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2012
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 20 institutions in 9 countries.

Keith E SimmonDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, Utah 84108, USA.
Lori Hall
Christopher W Woods
Francesc Marco
Jose M Miro
Christopher Cabell
Bruno Hoen
Mercedes Marin
Riccardo Utili
Efthymia Giannitsioti
Thanh Doco-Lecompte
Suzanne Bradley
Stanley Mirrett
Arjana Tambic
Suzanne Ryan
David Gordon
Phillip Jones
Tony Korman
Dannah Wray
L Barth Reller
Marie-Francoise Tripodi
Patrick Plesiat
Arthur J Morris
Selwyn Lang
David R Murdoch
Cathy A Petti
International Collaboration on Endocarditis Microbiology Investigators
ARUP Laboratories (United States) · USCentre Hospitalier Universitaire de Besançon · FRDuke Medical Center · USDurham VA Medical Center · USUniversitat de Barcelona · ESAnn Arbor VA Medical Center · USAuckland City Hospital · NZCentre Hospitalier Régional et Universitaire de Nancy · FRFlinders Medical Centre · AUHospital General Universitario Gregorio Marañón · ESIQVIA (United Kingdom) · GBMedical University of South Carolina · USMiddlemore Hospital · NZSouth Eastern Sydney Local Health District · AUUniversity General Hospital Attikon · GRUniversity Hospital Centre Zagreb · HRUniversity of Campania "Luigi Vanvitelli" · ITUniversity of Naples Federico II · ITUniversity of Otago · NZUNSW Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identification of viridans group streptococci (VGS) to the species level is difficult because VGS exchange genetic material. We performed multilocus DNA target sequencing to assess phylogenetic concordance of VGS for a well-defined clinical syndrome. The hierarchy of sequence data was often discordant, underscoring the importance of establishing biological relevance for finer phylogenetic distinctions.

Indexed as

Endocarditis, BacterialHumansPhylogenySequence Analysis, DNAStreptococcal InfectionsViridans Streptococci

Identifiers

PMID18650347
PMCPMC2546745
OpenAlexW2155385812

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.