ArticleEnvironmental microbiology2008
probeCheck--a central resource for evaluating oligonucleotide probe coverage and specificity.
Article in Environmental microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
68 citing papers in PubMed.
- Profiling the heterogeneity of microbial populations and communities at the single-cell level.mLife · 2025Review
- Long-term detection of Hartmannibacter diazotrophicus on winter wheat and spring barley roots under field conditions revealed positive correlations on yield parameters with the bacterium abundance.FEMS microbiology ecology · 2024Article
- The Improvement of Fluorescence In Situ Hybridization Technique Based on Explorations of Symbionts in Cicadas.International journal of molecular sciences · 2023Article
- Colitis caused by Entamoeba histolytica identified by real-time-PCR and fluorescence in situ hybridization from formalin-fixed, paraffin-embedded tissue.European journal of microbiology & immunology · 2022Article
- First Detection ofPathogens (Basel, Switzerland) · 2022Article
- Identification ofJournal of fungi (Basel, Switzerland) · 2021Article
- Fusobacterium nucleatum predicts a high risk of metastasis for esophageal squamous cell carcinoma.BMC microbiology · 2021Article
- Bodo saltans (Kinetoplastida) is dependent on a novel Paracaedibacter-like endosymbiont that possesses multiple putative toxin-antitoxin systems.The ISME journal · 2021Article
- Role of the β-Catenin/REG Iα Axis in the Proliferation of Sessile Serrated Adenoma/Polyps Associated withPathogens (Basel, Switzerland) · 2021Article
- Spatial structure in the "Plastisphere": Molecular resources for imaging microscopic communities on plastic marine debris.Molecular ecology resources · 2020Article
- Spatial Ecology of the Human Tongue Dorsum Microbiome.Cell reports · 2020Article
- Diversity of Betaproteobacteria revealed by novel primers suggests their role in arsenic cycling.Heliyon · 2020Article
- Unexpected host dependency of Antarctic Nanohaloarchaeota.Proceedings of the National Academy of Sciences of the United States of America · 2019Article
- Phylogenetic and Structural Identification of a Novel MagnetotacticApplied and environmental microbiology · 2019Article
- Fusobacterium nucleatum Potentiates Intestinal Tumorigenesis in Mice via a Toll-Like Receptor 4/p21-Activated Kinase 1 Cascade.Digestive diseases and sciences · 2018Article
- Acquisition of a Novel Sulfur-Oxidizing Symbiont in the Gutless Marine Worm Inanidrilus exumae.Applied and environmental microbiology · 2018Article
- Specific FluorescenceFrontiers in plant science · 2018Article
- Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters.Microbiome · 2017Article
- Single-Cell Resolution of Uncultured Magnetotactic Bacteria via Fluorescence-Coupled Electron Microscopy.Applied and environmental microbiology · 2017Article
- 'Candidatus Cochliophilus cryoturris' (Coxiellaceae), a symbiont of the testate amoeba Cochliopodium minus.Scientific reports · 2017Article
8 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
The web server probeCheck, freely accessible at http://www.microbial-ecology.net/probecheck, provides a pivotal forum for rapid specificity and coverage evaluations of probes and primers against selected databases of phylogenetic and functional marker genes. Currently, 24 widely used sequence collections including the Ribosomal Database Project (RDP) II, Greengenes, SILVA and the Functional Gene Pipeline/Repository can be queried. For this purpose, probeCheck integrates a new online version of the popular ARB probe match tool with free energy (DeltaG) calculations for each perfectly matched and mismatched probe-target hybrid, allowing assessment of the theoretical binding stabilities of oligo-target and non-target hybrids. For each output sequence, the accession number, the GenBank taxonomy and a link to the respective entry at GenBank, EMBL and, if applicable, the query database are displayed. Filtering options allow customizing results on the output page. In addition, probeCheck is linked with probe match tools of RDP II and Greengenes, NCBI blast, the Oligonucleotide Properties Calculator, the two-state folding tool of the DINAMelt server and the rRNA-targeted probe database probeBase. Taken together, these features provide a multifunctional platform with maximal flexibility for the user in the choice of databases and options for the evaluation of published and newly developed probes and primers.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.