Evidence map›Paper›PMID 18640984›Full record

ArticleThe Journal of biological chemistry2008

Crystal structure of colicin M, a novel phosphatase specifically imported by Escherichia coli.

Kornelius Zeth, Christin Römer, Silke I Patzer, Volkmar Braun

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 64 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. The Biology of Colicin M and Its Orthologs.Antibiotics (Basel, Switzerland) · 2021
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. A Natural ChimericmBio · 2017
    Article
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  14. Review
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kornelius ZethMax Planck Institute for Developmental Biology, Department of Protein Evolution, D-72076 Tübingen, Germany.
Christin RömerMax Planck Institute for Developmental Biology, Department of Protein Evolution, D-72076 Tübingen, Germany.
Silke I PatzerMax Planck Institute for Developmental Biology, Department of Protein Evolution, D-72076 Tübingen, Germany.
Volkmar BraunMax Planck Institute for Developmental Biology, Department of Protein Evolution, D-72076 Tübingen, Germany. Electronic address: volkmar.braun@tuebingen.mpg.de.
Max Planck Society · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Colicins are cytotoxic proteins secreted by certain strains of Escherichia coli. Colicin M is unique among these toxins in that it acts in the periplasm and specifically inhibits murein biosynthesis by hydrolyzing the pyrophosphate linkage between bactoprenol and the murein precursor. We crystallized colicin M and determined the structure at 1.7A resolution using x-ray crystallography. The protein has a novel structure composed of three domains with distinct functions. The N-domain is a short random coil and contains the exposed TonB box. The central domain includes a hydrophobic alpha-helix and binds presumably to the FhuA receptor. The C-domain is composed of a mixed alpha/beta-fold and forms the phosphatase. The architectures of the individual modules show no similarity to known structures. Amino acid replacements in previously isolated inactive colicin M mutants are located in the phosphatase domain, which contains a number of surface-exposed residues conserved in predicted bacteriocins of other bacteria. The novel phosphatase domain displays no sequence similarity to known phosphatases. The N-terminal and central domains are not conserved among bacteriocins, which likely reflect the distinct import proteins required for the uptake of the various bacteriocins. The homology pattern supports our previous proposal that colicins evolved by combination of distinct functional domains.

Indexed as

Amino Acid SequenceBacterial Outer Membrane ProteinsBacteriocinsCell MembraneColicinsConserved SequenceCrystallography, X-RayEscherichia coliEscherichia coli ProteinsMembrane ProteinsModels, MolecularMolecular ConformationMolecular Sequence DataMutationProtein Structure, TertiarySequence Homology, Amino AcidBacterial Outer Membrane ProteinsBacteriocinsColicinsEscherichia coli ProteinsFhuA protein, E coliMembrane ProteinstonB protein, E coli

Identifiers

PMID18640984
PMCPMC2533080
OpenAlexW1972485223

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.