Evidence map›Paper›PMID 18640053›Full record

ArticleJournal of the American Society for Mass Spectrometry2008

Hydrogen atom scrambling in selectively labeled anionic peptides upon collisional activation by MALDI tandem time-of-flight mass spectrometry.

Nicolai Bache, Kasper D Rand, Peter Roepstorff, Michael Ploug, Thomas J D Jørgensen

Abstract readComment
PubMed Publisher
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Gas-Phase Hydrogen/Deuterium Scrambling in Negative-Ion Mode Tandem Mass Spectrometry.Journal of the American Society for Mass Spectrometry · 2019
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Protein hydrogen exchange at residue resolution by proteolytic fragmentation mass spectrometry analysis.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  11. Spectroscopic evidence for an oxazolone structure in anionic b-type peptide fragments.Journal of the American Society for Mass Spectrometry · 2012
    Article
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Nicolai BacheDepartment of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.
Kasper D Rand
Peter Roepstorff
Michael Ploug
Thomas J D Jørgensen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have previously shown that peptide amide hydrogens undergo extensive intramolecular migration (i.e., complete hydrogen scrambling) upon collisional activation of protonated peptides (Jørgensen et al. J. Am. Chem. Soc. 2005, 127, 2785-2793). The occurrence of hydrogen scrambling enforces severe limitations on the application of gas-phase fragmentation as a convenient method to obtain information about the site-specific deuterium uptake for proteins and peptides in solution. To investigate whether deprotonated peptides exhibit a lower level of scrambling relative to their protonated counterparts, we have now measured the level of hydrogen scrambling in a deprotonated, selectively labeled peptide using MALDI tandem time-of-flight mass spectrometry. Our results conclusively show that hydrogen scrambling is prevalent in the deprotonated peptide upon collisional activation. The amide hydrogens ((1)H/(2)H) have migrated extensively in the anionic peptide, thereby erasing the original regioselective deuteration pattern obtained in solution.

Indexed as

Amino Acid SequenceAnionsCrystallography, X-RayHumansHydrogenIn Vitro TechniquesModels, MolecularOligopeptidesPeptidesProtein Structure, TertiaryReceptors, Urokinase Plasminogen ActivatorRecombinant ProteinsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTandem Mass SpectrometryAnionsHydrogenOligopeptidesPeptidesReceptors, Urokinase Plasminogen ActivatorRecombinant Proteins

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.