Evidence map›Paper›PMID 18638376›Full record

ArticleBMC evolutionary biology2008

The molecular basis of color vision in colorful fish: four long wave-sensitive (LWS) opsins in guppies (Poecilia reticulata) are defined by amino acid substitutions at key functional sites.

Matthew N Ward, Allison M Churcher, Kevin J Dick, Chris R J Laver, Greg L Owens, Megan D Polack, Pam R Ward, Felix Breden, John S Taylor

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
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  4. International journal of molecular sciences · 2024
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  9. Genetic and plastic variation in opsin gene expression, light sensitivity, and female response to visual signals in the guppy.Proceedings of the National Academy of Sciences of the United States of America · 2018
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  15. Exploring visual plasticity: dietary carotenoids can change color vision in guppies (Poecilia reticulata).Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2016
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  20. Developmental plasticity in vision and behavior may help guppies overcome increased turbidity.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Matthew N WardUniversity of Victoria, Department of Biology, Victoria, British Columbia, Canada. rugbyman7@hotmail.com
Allison M Churcher
Kevin J Dick
Chris R J Laver
Greg L Owens
Megan D Polack
Pam R Ward
Felix Breden
John S Taylor
University of Victoria · CASimon Fraser University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundComparisons of functionally important changes at the molecular level in model systems have identified key adaptations driving isolation and speciation. In cichlids, for example, long wavelength-sensitive (LWS) opsins appear to play a role in mate choice and male color variation within and among species. To test the hypothesis that the evolution of elaborate coloration in male guppies (Poecilia reticulata) is also associated with opsin gene diversity, we sequenced long wavelength-sensitive (LWS) opsin genes in six species of the family Poeciliidae.

resultsSequences of four LWS opsin genes were amplified from the guppy genome and from mRNA isolated from adult guppy eyes. Variation in expression was quantified using qPCR. Three of the four genes encode opsins predicted to be most sensitive to different wavelengths of light because they vary at key amino acid positions. This family of LWS opsin genes was produced by a diversity of duplication events. One, an intronless gene, was produced prior to the divergence of families Fundulidae and Poeciliidae. Between-gene PCR and DNA sequencing show that two of the guppy LWS opsins are linked in an inverted orientation. This inverted tandem duplication event occurred near the base of the poeciliid tree in the common ancestor of Poecilia and Xiphophorus. The fourth sequence has been uncovered only in the genus Poecilia. In the guppies surveyed here, this sequence is a hybrid, with the 5' end most similar to one of the tandem duplicates and the 3' end identical to the other.

conclusionEnhanced wavelength discrimination, a possible consequence of opsin gene duplication and divergence, might have been an evolutionary prerequisite for color-based sexual selection and have led to the extraordinary coloration now observed in male guppies and in many other poeciliids.

Indexed as

Amino Acid SubstitutionAnimalsColor PerceptionCyprinodontiformesGene DuplicationMosaicismNucleic Acid HybridizationPhylogenyPoeciliaReverse Transcriptase Polymerase Chain ReactionRod OpsinsRod Opsins

Identifiers

PMID18638376
PMCPMC2527612
OpenAlexW2162203921

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.