Evidence map›Paper›PMID 18637203›Full record

ArticleBMC genetics2008

Multitrait analysis of quantitative trait loci using Bayesian composite space approach.

Ming Fang, Dan Jiang, Li Jun Pu, Hui Jiang Gao, Peng Ji, Hong Yi Wang, Run Qing Yang

Abstract read
In one paragraph

Article in BMC genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. An expectation and maximization algorithm for estimating Q X E interaction effects.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ming FangLife Science College, Heilongjiang August First Land Reclamation University, Daqing, 163319, PR China. fangming618@126.com
Dan Jiang
Li Jun Pu
Hui Jiang Gao
Peng Ji
Hong Yi Wang
Run Qing Yang

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMultitrait analysis of quantitative trait loci can capture the maximum information of experiment. The maximum-likelihood approach and the least-square approach have been developed to jointly analyze multiple traits, but it is difficult for them to include multiple QTL simultaneously into one model.

resultsIn this article, we have successfully extended Bayesian composite space approach, which is an efficient model selection method that can easily handle multiple QTL, to multitrait mapping of QTL. There are many statistical innovations of the proposed method compared with Bayesian single trait analysis. The first is that the parameters for all traits are updated jointly by vector or matrix; secondly, for QTL in the same interval that control different traits, the correlation between QTL genotypes is taken into account; thirdly, the information about the relationship of residual error between the traits is also made good use of. The superiority of the new method over separate analysis was demonstrated by both simulated and real data. The computing program was written in FORTRAN and it can be available for request.

conclusionThe results suggest that the developed new method is more powerful than separate analysis.

Indexed as

Bayes TheoremChromosome MappingModels, GeneticQuantitative Trait LociMultivariate Analysis

Identifiers

PMID18637203
PMCPMC2515852

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.