ArticleFunctional & integrative genomics2009
Transcript profiling in Vitis riparia during chilling requirement fulfillment reveals coordination of gene expression patterns with optimized bud break.
Article in Functional & integrative genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
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Who cites it
46 citing papers in PubMed.
- MADS-domain transcription factor AGAMOUS LIKE-9 participates in the gibberellin pathway to promote bud dormancy release of tree peony.Horticulture research · 2025Article
- PsmiR159b-Horticulture research · 2024Article
- Review
- Genomic signatures of natural selection at phenology-related genes in a widely distributed tree species Fagus sylvatica L.BMC genomics · 2021Article
- Integrative Analysis of Gene Expression and miRNAs Reveal Biological Pathways Associated with Bud Paradormancy and Endodormancy in Grapevine.Plants (Basel, Switzerland) · 2021Article
- Ascorbate glutathione-dependent H2O2 scavenging is an important process in axillary bud outgrowth in rosebush.Annals of botany · 2020Article
- Comparative transcriptome analysis provides insight into regulation pathways and temporal and spatial expression characteristics of grapevine (Vitis vinifera) dormant buds in different nodes.BMC plant biology · 2020Article
- Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.).BMC plant biology · 2019Article
- Gene expression analysis of bud burst process in European hazelnut (Physiology and molecular biology of plants : an international journal of functional plant biology · 2019Article
- Modulation of Dormancy and Growth Responses in Reproductive Buds of Temperate Trees.Frontiers in plant science · 2018Review
- Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora 'Hang Baishao'.BMC plant biology · 2017Article
- Kiwifruit SVP2 gene prevents premature budbreak during dormancy.Journal of experimental botany · 2017Article
- Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape.BMC plant biology · 2017Article
- Hydrogen cyanamide breaks grapevine bud dormancy in the summer through transient activation of gene expression and accumulation of reactive oxygen and nitrogen species.BMC plant biology · 2016Article
- Gene expression and proteomic analysis of shoot apical meristem transition from dormancy to activation in Cunninghamia lanceolata (Lamb.) Hook.Scientific reports · 2016Article
- A next-generation marker genotyping platform (AmpSeq) in heterozygous crops: a case study for marker-assisted selection in grapevine.Horticulture research · 2016Article
- Next Generation Mapping of Enological Traits in an F2 Interspecific Grapevine Hybrid Family.PloS one · 2016Article
- A genome-wide analysis of MADS-box genes in peach [Prunus persica (L.) Batsch].BMC plant biology · 2015Article
- Extensive Transcriptome Changes During Natural Onset and Release of Vegetative Bud Dormancy in Populus.Frontiers in plant science · 2015Article
- Article
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Endodormant grapevine buds require a period of chilling before they break and begin to grow. Custom Vitis bud cDNA microarrays (9,216 features) were used to examine gene expression patterns in overwintering Vitis riparia buds during 2,000 h of 4 degrees C chilling. Three-node cuttings collected concurrently with buds were monitored to determine dormancy status. Chilling requirement was fulfilled after 1,500 h of chilling; however, 2,000 h of chilling significantly increased the rate of bud break. Microarray analysis identified 1,469 significantly differentially expressed (p value < 0.05) array features when 1,000, 1,500, and 2,000 h of chilling were compared to 500 h of chilling. Functional classification revealed that the majority of genes were involved in metabolism, cell defense/stress response, and genetic information processing. The number of significantly differentially expressed genes increased with chilling hour accumulation. The expression of a group of 130 genes constantly decreased during the chilling period. Up-regulated genes were not detected until the later stages of chilling accumulation. Hierarchical clustering of non-redundant expressed sequence tags revealed inhibition of genes involved in carbohydrate and energy metabolism and activation of genes involved in signaling and cell growth. Clusters with expression patterns associated with increased chilling and bud break were identified, indicating several candidate genes that may serve as indicators of bud chilling requirement fulfillment.
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