Evidence map›Paper›PMID 18632872›Full record

ArticleThe Journal of antimicrobial chemotherapy2008

Functional characterization of Tn1331 gene cassettes.

Maria S Ramirez, T Richard Parenteau, Daniela Centron, Marcelo E Tolmasky

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.5field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Aminoglycoside 6'-Antibiotics (Basel, Switzerland) · 2020
    Article
  3. Carbapenemases: TransformingBiomolecules · 2020
    Review
  4. Article
  5. SmallFrontiers in microbiology · 2019
    Article
  6. Amikacin: Uses, Resistance, and Prospects for Inhibition.Molecules (Basel, Switzerland) · 2017
    Review
  7. Characterization of Tn6238 with a new allele of aac(6')-Ib-cr.Antimicrobial agents and chemotherapy · 2015
    Article
  8. Article
  9. Article
  10. Article
  11. Aminoglycoside modifying enzymes.Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy · 2010
    Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Maria S RamirezCenter for Applied Biotechnology Studies, Department of Biological Science, College of Natural Sciences and Mathematics, California State University Fullerton, Fullerton, CA 92834-6850, USA.
T Richard Parenteau
Daniela Centron
Marcelo E Tolmasky
California State University, Fullerton · USUniversity of Buenos Aires · AR

Funding

MARC PROGRAM FOR CALIFORNIA STATE UNIVERSITY, FULLERTONT34GM008612 · NIGMS · CALIFORNIA STATE UNIVERSITY FULLERTON · PI COHEN, AMYBETH · 1996 to 2021
$7.4M
DEALING WITH ANTIBIOTIC RESISTANCE--ANTISENSE TECHNOLOGYR15AI047115 · NIAID · CALIFORNIA STATE UNIVERSITY FULLERTON · PI TOLMASKY, MARCELO E · 2000 to 2022
$1.8M
NIAID NIH HHS 2R15AI047115NIAID NIH HHS R15 AI047115NIGMS NIH HHS 2T34GM008612-12NIGMS NIH HHS T34 GM008612
6 · The paper itself

Abstract

objectivesThe transposon Tn1331 possesses a region including three antibiotic resistance genes with the structure aac(6')-Ib-attC-aadA1-attI1*-bla(OXA-9)-attC, which potentially includes four gene cassettes. Experimental data on the mobility of fusion cassettes as well as those on mobility of cassettes in a genetic environment such as Tn1331, which lacks an integrase gene, are limited. Therefore, experiments using pJHCMW1, a plasmid harbouring this transposon, in the presence of IntI1 supplied in trans were carried out to define which cassettes are mobile in vivo.

methodsIn vivo excision of resistance genes was investigated in Escherichia coli cells harbouring pJHCMW1 and in a recombinant clone that included the intI1 gene under the control of the P(tac) promoter. Plasmid DNA was purified and subjected to PCR analysis, and DNA sequencing of PCR products was performed to determine whether excision had occurred. RESULTS AND

conclusionsIn vivo recombination experiments showed that the fused aadA1-attI1*-bla(OXA-9)-attC gene cassette was excised in the presence of IntI1. The excision of a DNA fragment including aadA1-attI1* was also detected but at a lower frequency. The analysis of the latter recombination reaction showed that, although attI1* includes only a small fraction of the complete attI1 sequence, it is still used as a substrate by IntI1, albeit in a very inefficient manner.

Indexed as

DNA Transposable ElementsDrug Resistance, BacterialGenes, BacterialRecombination, GeneticDNA, BacterialEscherichia coliEscherichia coli ProteinsIntegrasesPlasmidsPolymerase Chain ReactionSequence Analysis, DNADNA, BacterialDNA Transposable ElementsEscherichia coli ProteinsIntegrasesintegron integrase IntI1

Identifiers

PMID18632872
PMCPMC2536708
OpenAlexW1979349666

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.