Evidence map›Paper›PMID 18631365›Full record

ArticleEnvironmental microbiology2008

The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum).

Elizabeth Pierce, Gary Xie, Ravi D Barabote, Elizabeth Saunders, Cliff S Han, John C Detter, Paul Richardson, Thomas S Brettin, Amaresh Das, Lars G Ljungdahl and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Environmental microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 138 papers.

0numbers the graph read from it
0cells of the map it votes in
138citing papers in PubMed
31.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

138 citing papers in PubMed, 265 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Impact of acetate on COISME communications · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Probing efficient microbial COMicrobial biotechnology · 2024
    Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. A comparative genome analysis of theMicrobial genomics · 2023
    Article
  16. Review
  17. Article
  18. Microbial COArchives of microbiology · 2022
    Review
  19. Insights into the Structure and Protein Composition ofInternational journal of molecular sciences · 2022
    Article
  20. Article

78 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Elizabeth PierceDepartment of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA.
Gary Xie
Ravi D Barabote
Elizabeth Saunders
Cliff S Han
John C Detter
Paul Richardson
Thomas S Brettin
Amaresh Das
Lars G Ljungdahl
Stephen W Ragsdale
Joint Genome Institute · USLos Alamos National Laboratory · USUniversity of Georgia · USUniversity of Michigan–Ann Arbor · USLawrence Berkeley National Laboratory · US

Funding

Enzymology of the Reductive Acetyl-CoA PathwayR37GM039451 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAGSDALE, STEPHEN WILEY · 2012 to 2021
$4.0M
MECHANISMS OF METHYL TRANSFERS IN ACETYL-COA SYNTHESISR01GM039451 · NIGMS · UNIVERSITY OF WISCONSIN MILWAUKEE · PI RAGSDALE, STEPHEN WILEY · 1991 to 2011
$3.6M
MECHANISMS OF METHYL TRANSFERS IN ACETYL-COA SYNTHESISR29GM039451 · NIGMS · UNIVERSITY OF WISCONSIN MILWAUKEE · PI RAGSDALE, STEPHEN W · 1988 to 1991
–
NIGMS NIH HHS GM39451NIGMS NIH HHS R01 GM039451NIGMS NIH HHS R37 GM039451
6 · The paper itself

Abstract

This paper describes the genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum), which is the model acetogenic bacterium that has been widely used for elucidating the Wood-Ljungdahl pathway of CO and CO(2) fixation. This pathway, which is also known as the reductive acetyl-CoA pathway, allows acetogenic (often called homoacetogenic) bacteria to convert glucose stoichiometrically into 3 mol of acetate and to grow autotrophically using H(2) and CO as electron donors and CO(2) as an electron acceptor. Methanogenic archaea use this pathway in reverse to grow by converting acetate into methane and CO(2). Acetogenic bacteria also couple the Wood-Ljungdahl pathway to a variety of other pathways to allow the metabolism of a wide variety of carbon sources and electron donors (sugars, carboxylic acids, alcohols and aromatic compounds) and electron acceptors (CO(2), nitrate, nitrite, thiosulfate, dimethylsulfoxide and aromatic carboxyl groups). The genome consists of a single circular 2 628 784 bp chromosome encoding 2615 open reading frames (ORFs), which includes 2523 predicted protein-encoding genes. Of these, 1834 genes (70.13%) have been assigned tentative functions, 665 (25.43%) matched genes of unknown function, and the remaining 24 (0.92%) had no database match. A total of 2384 (91.17%) of the ORFs in the M. thermoacetica genome can be grouped in orthologue clusters. This first genome sequence of an acetogenic bacterium provides important information related to how acetogens engage their extreme metabolic diversity by switching among different carbon substrates and electron donors/acceptors and how they conserve energy by anaerobic respiration. Our genome analysis indicates that the key genetic trait for homoacetogenesis is the core acs gene cluster of the Wood-Ljungdahl pathway.

Indexed as

Genome, BacterialBacterial ProteinsBase SequenceChromosomes, BacterialDNA, BacterialGene OrderGram-Positive BacteriaMetabolic Networks and PathwaysMolecular Sequence DataOpen Reading FramesPhylogenySequence Analysis, DNASequence HomologyBacterial ProteinsDNA, Bacterial

Identifiers

PMID18631365
PMCPMC2575129
OpenAlexW1848716311

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.