ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2008
Development of microsatellite markers specific for the short arm of rye (Secale cereale L.) chromosome 1.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
22 citing papers in PubMed.
- Genome-wide association mapping for field and seedling resistance to the emerging Puccinia graminis f. sp. tritici race TTRTF in wheat.The plant genome · 2022Article
- 1RS arm of Secale cereanum 'Kriszta' confers resistance to stripe rust, improved yield components and high arabinoxylan content in wheat.Scientific reports · 2020Article
- Characterization of Ethiopian Wheat Germplasm for Resistance to FourPlant disease · 2019Article
- Dissecting the Complex Genome of Crested Wheatgrass by Chromosome Flow Sorting.The plant genome · 2019Article
- Integration of Genetic and Cytogenetic Maps and Identification of Sex Chromosome in Garden Asparagus (Frontiers in plant science · 2018Article
- Physical Location of New PCR-Based Markers and Powdery Mildew Resistance Gene(s) on Rye (Frontiers in plant science · 2017Article
- Production and cytomolecular identification of new wheat-perennial rye (Secale cereanum) disomic addition lines with yellow rust resistance (6R) and increased arabinoxylan and protein content (1R, 4R, 6R).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
- Mapping a region within the 1RS.1BL translocation in common wheat affecting grain yield and canopy water status.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Flow cytometric chromosome sorting from diploid progenitors of bread wheat, T. urartu, Ae. speltoides and Ae. tauschii.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Identification, cross-taxon transferability and application of full-length cDNA SSR markers in Phyllostachys pubescens.SpringerPlus · 2014Article
- Homoeologous relationship of rye chromosome arms as detected with wheat PLUG markers.Chromosoma · 2013Article
- Chromosomes in the flow to simplify genome analysis.Functional & integrative genomics · 2012Review
- Sequence composition and gene content of the short arm of rye (Secale cereale) chromosome 1.PloS one · 2012Article
- Article
- Article
- Isolated chromosomes as a new and efficient source of DArT markers for the saturation of genetic maps.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Development of a wheat genotype combining the recessive crossability alleles kr1kr1kr2kr2 and the 1BL.1RS translocation, for the rapid enrichment of 1RS with new allelic variation.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- DArT markers for the rye genome - genetic diversity and mapping.BMC genomics · 2009Article
- Comparative mapping of DNA sequences in rye (Secale cereale L.) in relation to the rice genome.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R.BMC plant biology · 2008Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We developed 74 microsatellite marker primer pairs yielding 76 polymorphic loci, specific for the short arm of rye chromosome 1R (1RS) in wheat background. Four libraries enriched for microsatellite motifs AG, AAG, AC and AAC were constructed from DNA of flow-sorted 1RS chromosomes and 1,290 clones were sequenced. Additionally, 2,778 BAC-end-sequences from a 1RS specific BAC library were used for microsatellite screening and marker development. From 724 designed primer pairs, 119 produced 1RS specific bands and 74 of them showed polymorphism in a set of ten rye genotypes. We show that this high attrition rate was due to the highly repetitive nature of the rye genome consisting of a large number of transposable elements. We mapped the 76 polymorphic loci physically into three regions (bins) on 1RS; 29, 30 and 17 loci were assigned to the distal, intercalary and proximal regions of the 1RS arm, respectively. The average polymorphism information content increases with distance from the centromere, which could be due to an increased recombination rate along the chromosome arm toward's the telomere. Additionally, we demonstrate, using the data of the whole rice genome, that the intra-genomic length variation of microsatellites correlates (r = 0.87) with microsatellite polymorphism. Based on these results we suggest that an analysis of the microsatellite length variation is conducted for each species prior to microsatellite development, provided that sufficient sequence information is available. This will allow to selectively design microsatellite markers for motifs likely to yield a high level of polymorphism.
Indexed as
Identifiers
18626624What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.