Evidence map›Paper›PMID 18626569›Full record

ArticleJournal of human genetics2008

VSX1 gene variants are associated with keratoconus in unrelated Korean patients.

Jee-Won Mok, Sun-Jin Baek, Choun-Ki Joo

Registry-linked trialOpen access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Journal of human genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03071302 (Evaluation of Tomographic and Genetic Aspects of Keratoconus Patients Compared to Sounds Corneas), which is not on this map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03071302 nacompletednot on this mapstarted 2015, after this paper: background citation

Evaluation of Tomographic and Genetic Aspects of Keratoconus Patients Compared to Sounds Corneas

TypeinterventionalSponsorSao Jose do Rio Preto Medical SchoolRan2015 to 2016Enrolled210ConditionsKeratoconus, Keratoconus, Unspecified, BilateralArmsEVALUATION OF VSX1, SOD1, and TIMP3 genes
3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 69 citations in OpenAlex.

  1. Pooled it
  2. Systemic and Ocular Associations of Keratoconus.Expert review of ophthalmology · 2024
    Article
  3. Article
  4. Clinical and genetic analysisFrontiers in genetics · 2023
    Article
  5. Article
  6. Article
  7. Expression of visual system homeobox 1 in human keratoconus.International journal of ophthalmology · 2019
    Article
  8. Review
  9. Article
  10. Article
  11. Genomic strategies to understand causes of keratoconus.Molecular genetics and genomics : MGG · 2017
    Review
  12. Genetics in Keratoconus - What is New?The open ophthalmology journal · 2017
    Article
  13. Article
  14. Article
  15. The genetic and environmental factors for keratoconus.BioMed research international · 2015
    Review
  16. Article
  17. Article
  18. Genetics of keratoconus: where do we stand?Journal of ophthalmology · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jee-Won MokLaboratory of Ophthalmology and Visual Science, Department of Ophthalmology and Visual Science, Catholic Research Institutes of Medical Science, Catholic University Medical College, The Catholic University of Korea, 505 Banpo-dong, Seocho-ku, Seoul, 137-701, South Korea.
Sun-Jin BaekLaboratory of Ophthalmology and Visual Science, Department of Ophthalmology and Visual Science, Catholic Research Institutes of Medical Science, Catholic University Medical College, The Catholic University of Korea, 505 Banpo-dong, Seocho-ku, Seoul, 137-701, South Korea.
Choun-Ki JooLaboratory of Ophthalmology and Visual Science, Department of Ophthalmology and Visual Science, Catholic Research Institutes of Medical Science, Catholic University Medical College, The Catholic University of Korea, 505 Banpo-dong, Seocho-ku, Seoul, 137-701, South Korea. ckjoo@catholic.ac.kr.
Catholic University of Korea · KRKim's Eye Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Keratoconus is a bilateral ectatic disorder characterized by the central thinning of corneal tissue leading to visual impairment. To investigate the possibility of visual system homeobox 1 (VSXI) as a candidate susceptibility gene for Korean patients with keratoconus, we performed a mutation screening of the VSXI gene in 249 unrelated patients with keratoconus and 208 control subjects without the ocular disorder. We found two heterozygous novel missense mutations in exon 2: N151S and G160V. The G160V mutation was identified in 13 keratoconus patients (5.3%), and the N151S mutation was found in only one keratoconus patient (0.4%). We also detected three synonymous polymorphisms and four intragenic polymorphisms. The IVS1-11*a allele was associated with a significantly increased risk of keratoconus in Korean patients [3.6 vs. 0.5%, p = 0.001, odds ratio (OR) = 7.76, 95% confidence interval (CI) 1.989-30.241). Other polymorphisms did not show an association with keratoconus risk. Our data is the first reported VSX1 mutation screening in Korean keratoconus patients. We detected two novel missense mutations and one intragenic polymorphism in the VSX1 gene, which show a strong statistical association with unrelated keratoconus patients. Consequently, our study suggests that VSX1 gene variants seem to be significant genetic variants for keratoconus predisposition in unrelated Korean patients.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideBase SequenceCase-Control StudiesDNA Mutational AnalysisEye ProteinsGene FrequencyHomeodomain ProteinsHumansKeratoconusKoreaEye ProteinsHomeodomain ProteinsVSX1 protein, human

Identifiers

PMID18626569
OpenAlexW1979991648

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.