Evidence map›Paper›PMID 18625844›Full record

ArticleThe Journal of cell biology2008

Deadenylation is prerequisite for P-body formation and mRNA decay in mammalian cells.

Dinghai Zheng, Nader Ezzeddine, Chyi-Ying A Chen, Wenmiao Zhu, Xiangwei He, Ann-Bin Shyu

Abstract read
In one paragraph

Article in The Journal of cell biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed.

  1. Article
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  4. Review
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  6. Review
  7. Poly(A) tail regulation in stem cells and early development.Cell regeneration (London, England) · 2025
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  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. mRNA stability and mMolecular cell · 2023
    Article
  17. Article
  18. Review of the current and potential use of biological and molecular methods for the estimation of the postmortem interval in animals and humans.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2023
    Review
  19. Article
  20. Article

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Dinghai ZhengDepartment of Biochemistry and Molecular Biology, The University of Texas Medical School, Houston, TX 77030, USA.
Nader Ezzeddine
Chyi-Ying A Chen
Wenmiao Zhu
Xiangwei He
Ann-Bin Shyu

Funding

Messenger RNA Turnover in Mammalian CellsR01GM046454 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI SHYU, ANN-BIN · 1991 to 2016
$7.1M
NIGMS NIH HHS GM 46454NIGMS NIH HHS R01 GM046454
6 · The paper itself

Abstract

Deadenylation is the major step triggering mammalian mRNA decay. One consequence of deadenylation is the formation of nontranslatable messenger RNA (mRNA) protein complexes (messenger ribonucleoproteins [mRNPs]). Nontranslatable mRNPs may accumulate in P-bodies, which contain factors involved in translation repression, decapping, and 5'-to-3' degradation. We demonstrate that deadenylation is required for mammalian P-body formation and mRNA decay. We identify Pan2, Pan3, and Caf1 deadenylases as new P-body components and show that Pan3 helps recruit Pan2, Ccr4, and Caf1 to P-bodies. Pan3 knockdown causes a reduction of P-bodies and has differential effects on mRNA decay. Knocking down Caf1 or overexpressing a Caf1 catalytically inactive mutant impairs deadenylation and mRNA decay. P-bodies are not detected when deadenylation is blocked and are restored when the blockage is released. When deadenylation is impaired, P-body formation is not restorable, even when mRNAs exit the translating pool. These results support a dynamic interplay among deadenylation, mRNP remodeling, and P-body formation in selective decay of mammalian mRNA.

Indexed as

PolyadenylationRNA StabilityAnimalsCytoplasmic StructuresExoribonucleasesHumansMiceModels, BiologicalMultiprotein ComplexesNIH 3T3 CellsPoly AProtein BindingProteinsProtein TransportPuromycinReceptors, CCR4Ccr4 protein, mouseCnot7 protein, mouseExoribonucleasesMultiprotein ComplexesPoly AProteinsPuromycinReceptors, CCR4Repressor ProteinsRibonucleasesRNA, Messenger

Identifiers

PMID18625844
PMCPMC2447901

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.