Evidence map›Paper›PMID 18625724›Full record

ArticleMolecular and cellular biology2008

Dre2, a conserved eukaryotic Fe/S cluster protein, functions in cytosolic Fe/S protein biogenesis.

Yan Zhang, Elise R Lyver, Eiko Nakamaru-Ogiso, Heeyong Yoon, Boominathan Amutha, Dong-Woo Lee, Erfei Bi, Tomoko Ohnishi, Fevzi Daldal, Debkumar Pain and 1 more

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 148 citations in OpenAlex.

  1. Article
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  5. Metabolomic and Proteomic Changes inInternational journal of molecular sciences · 2022
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  11. Biogenesis of Iron-Sulfur Clusters and Their Role in DNA Metabolism.Frontiers in cell and developmental biology · 2021
    Review
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  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Fe-S Cluster Assembly in Oxymonads and Related Protists.Molecular biology and evolution · 2018
    Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Yan ZhangDepartment of Medicine, Division of Hematology-Oncology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Elise R Lyver
Eiko Nakamaru-Ogiso
Heeyong Yoon
Boominathan Amutha
Dong-Woo Lee
Erfei Bi
Tomoko Ohnishi
Fevzi Daldal
Debkumar Pain
Andrew Dancis
University of Pennsylvania · USRutgers New Jersey Medical School

Funding

Respiratory Complex III: Supercomplexes and ROS, from Bacteria to HumanR01GM038237 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DALDAL, M. FEVZI · 1987 to 2018
$5.9M
SIGNALING MECHANISMS IN CELL POLARITY IN YEASTR01GM059216 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BI, ERFEI · 1999 to 2012
$3.8M
PROTON &ELECTRON TRANSFER &ENERGY COUPLING IN SIT IR01GM030736 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI OHNISHI, TOMOKO NONE · 1985 to 2010
$3.1M
IRON TRAFFICKING IN SACCHAROMYCES CEREVISIAER01DK053953 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI DANCIS, ANDREW B. · 1998 to 2007
$2.4M
Mitochondrial aconitase: Fe-S cluster biogenesis and interaction with mtDNAR01AG030504 · NIA · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI PAIN, DEBKUMAR · 2008 to 2012
$1.6M
NIA NIH HHS R01 AG030504NIDDK NIH HHS R01 DK053953NIDDK NIH HHS R01 DK53953NIGMS NIH HHS GM 38239NIGMS NIH HHS R01 GM030736NIGMS NIH HHS R01 GM038237NIGMS NIH HHS R01 GM059216NIGMS NIH HHS R01 GM30736NIGMS NIH HHS R01 GM59216
6 · The paper itself

Abstract

In a forward genetic screen for interaction with mitochondrial iron carrier proteins in Saccharomyces cerevisiae, a hypomorphic mutation of the essential DRE2 gene was found to confer lethality when combined with Delta mrs3 and Delta mrs4. The dre2 mutant or Dre2-depleted cells were deficient in cytosolic Fe/S cluster protein activities while maintaining mitochondrial Fe/S clusters. The Dre2 amino acid sequence was evolutionarily conserved, and cysteine motifs (CX(2)CXC and twin CX(2)C) in human and yeast proteins were perfectly aligned. The human Dre2 homolog (implicated in blocking apoptosis and called CIAPIN1 or anamorsin) was able to complement the nonviability of a Deltadre2 deletion strain. The Dre2 protein with triple hemagglutinin tag was located in the cytoplasm and in the mitochondrial intermembrane space. Yeast Dre2 overexpressed and purified from bacteria was brown and exhibited signature absorption and electron paramagnetic resonance spectra, indicating the presence of both [2Fe-2S] and [4Fe-4S] clusters. Thus, Dre2 is an essential conserved Fe/S cluster protein implicated in extramitochondrial Fe/S cluster assembly, similar to other components of the so-called CIA (cytoplasmic Fe/S cluster assembly) pathway although partially localized to the mitochondrial intermembrane space.

Indexed as

Amino Acid SequenceCytoplasmEukaryotic CellsHumansIronIron-Sulfur ProteinsMitochondriaMitochondrial ProteinsMolecular Sequence DataRecombinant Fusion ProteinsRibosomal ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence AlignmentSequence Homology, Amino AcidSulfurDre2 protein, S cerevisiaeIronIron-Sulfur ProteinsMitochondrial ProteinsRecombinant Fusion Proteinsribosomal protein L25Ribosomal ProteinsSaccharomyces cerevisiae ProteinsSulfur

Identifiers

PMID18625724
PMCPMC2546940
OpenAlexW2058381923

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.