Evidence map›Paper›PMID 18625065›Full record

ArticleBMC veterinary research2008

Prevalence of the prion protein gene E211K variant in U.S. cattle.

Michael P Heaton, John W Keele, Gregory P Harhay, Jürgen A Richt, Mohammad Koohmaraie, Tommy L Wheeler, Steven D Shackelford, Eduardo Casas, D Andy King, Tad S Sonstegard and 7 more

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 53 citations in OpenAlex.

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  10. Review
  11. Article
  12. Genetics of Prion Disease in Cattle.Bioinformatics and biology insights · 2015
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Conserved properties of human and bovine prion strains on transmission to guinea pigs.Laboratory investigation; a journal of technical methods and pathology · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 1 country.

Michael P HeatonUSDA, ARS, U, S, Meat Animal Research Center (USMARC), State Spur 18D, P.O. Box 166, Clay Center, NE 68933, USA. mike.heaton@ars.usda.gov
John W Keele
Gregory P Harhay
Jürgen A Richt
Mohammad Koohmaraie
Tommy L Wheeler
Steven D Shackelford
Eduardo Casas
D Andy King
Tad S Sonstegard
Curtis P Van Tassell
Holly L Neibergs
Chad C Chase
Theodore S Kalbfleisch
Timothy P L Smith
Michael L Clawson
William W Laegreid
Agricultural Research Service · USRoman L. Hruska U.S. Meat Animal Research Center · USNational Animal Disease Center · USUniversity of Louisville · USUrbana University · USWashington State University · US

Funding

Zoonotic potential of CWD and influence of environmental contamination on prion propagationP01AI077774 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI CLAUDIO SOTO · 2008 to 2026
$36.1M
NIAID NIH HHS P01 AI077774NIAID NIH HHS P01 AI 77774-01
6 · The paper itself

Abstract

backgroundIn 2006, an atypical U.S. case of bovine spongiform encephalopathy (BSE) was discovered in Alabama and later reported to be polymorphic for glutamate (E) and lysine (K) codons at position 211 in the bovine prion protein gene (Prnp) coding sequence. A bovine E211K mutation is important because it is analogous to the most common pathogenic mutation in humans (E200K) which causes hereditary Creutzfeldt - Jakob disease, an autosomal dominant form of prion disease. The present report describes a high-throughput matrix-associated laser desorption/ionization-time-of-flight mass spectrometry assay for scoring the Prnp E211K variant and its use to determine an upper limit for the K211 allele frequency in U.S. cattle.

resultsThe K211 allele was not detected in 6062 cattle, including those from five commercial beef processing plants (3892 carcasses) and 2170 registered cattle from 42 breeds. Multiple nearby polymorphisms in Prnp coding sequence of 1456 diverse purebred cattle (42 breeds) did not interfere with scoring E211 or K211 alleles. Based on these results, the upper bounds for prevalence of the E211K variant was estimated to be extremely low, less than 1 in 2000 cattle (Bayesian analysis based on 95% quantile of the posterior distribution with a uniform prior).

conclusionNo groups or breeds of U.S. cattle are presently known to harbor the Prnp K211 allele. Because a carrier was not detected, the number of additional atypical BSE cases with K211 will also be vanishingly low.

Indexed as

AnimalsCattleCodonEncephalopathy, Bovine SpongiformFemaleGene FrequencyGenetic VariationHaplotypesMalePolymorphism, Single NucleotidePrevalencePrionsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationUnited StatesCodonPrions

Identifiers

PMID18625065
PMCPMC2478677
OpenAlexW2127703628

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.