Evidence map›Paper›PMID 18621871›Full record

ArticleApplied and environmental microbiology2008

Isolation of predation-deficient mutants of Bdellovibrio bacteriovorus by using transposon mutagenesis.

John J Tudor, James J Davis, Marissa Panichella, Adam Zwolak

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

John J TudorDepartment of Biology, Saint Joseph's University, 5600 City Avenue, Philadelphia, PA 19131, USA. jtudor@sju.edu
James J Davis
Marissa Panichella
Adam Zwolak
Saint Joseph's University · US

Funding

MUTANTS IN BDELLOVIBRIO DEVELOPMENTR15GM052640 · NIGMS · SAINT JOSEPH'S UNIVERSITY · PI TUDOR, JOHN J · 1995 to 1995
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NIGMS NIH HHS R15 GM52640-01
6 · The paper itself

Abstract

The availability of the complete genome sequence of Bdellovibrio bacteriovorus provides an opportunity for investigating genes that play a significant role in predation. Using two independently derived facultatively predatory Bdellovibrio strains, we have designed a method to cultivate and screen transposon insertion mutants in 96-well microtiter dishes. Transposon insertion mutants were produced by introducing the plasposon pRL27, which carries a mini-Tn5. Mutants have been screened for predatory activity using 96-well plates. Seventeen independent nonpredatory mutants have been isolated, and DNA flanking the insertion has been sequenced. BLAST analysis revealed that most of these interrupted DNA sequences do not code for known proteins or functions. Two of the inactivated genes were analyzed further: one was found to code for a putative serine protease and the other a probable protein involved in secretion through the outer membrane. The methods described here are the first for the generation and isolation of predation-deficient mutants using random-transposon-insertion mutagenesis. As more mutants are isolated and their gene products analyzed, more light will be shed on how this predator carries out its exclusive life processes and perhaps how these products, or the organism itself, can be used for therapeutic, agricultural, and/or other purposes.

Indexed as

DNA Transposable ElementsAmino Acid SequenceBase SequenceBdellovibrioChromosomes, BacterialDNA, BacterialGenes, BacterialGenes, EssentialGenetic VectorsMolecular Sequence DataMutagenesis, InsertionalPlasmidsSequence AlignmentDNA, BacterialDNA Transposable Elements

Identifiers

PMID18621871
PMCPMC2546638
OpenAlexW2142297383

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.