Evidence map›Paper›PMID 18621707›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Subnanometer-resolution electron cryomicroscopy-based domain models for the cytoplasmic region of skeletal muscle RyR channel.

Irina I Serysheva, Steven J Ludtke, Matthew L Baker, Yao Cong, Maya Topf, David Eramian, Andrej Sali, Susan L Hamilton, Wah Chiu

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 109 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. The role of RyR2 oxidation in the blunted frequency-dependent facilitation of CaPflugers Archiv : European journal of physiology · 2018
    Article
  7. Integrative structure modeling with the Integrative Modeling Platform.Protein science : a publication of the Protein Society · 2018
    Article
  8. Review
  9. Cryo-electron tomography: an ideal method to study membrane-associated proteins.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  10. CaTrends in biochemical sciences · 2017
    Review
  11. A guide to the 3D structure of the ryanodine receptor type 1 by cryoEM.Protein science : a publication of the Protein Society · 2017
    Review
  12. Article
  13. Calcium Channels in Vascular Smooth Muscle.Advances in pharmacology (San Diego, Calif.) · 2017
    Review
  14. Article
  15. Article
  16. Structures of the colossal RyR1 calcium release channel.Current opinion in structural biology · 2016
    Review
  17. Article
  18. Article
  19. Article
  20. Review

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Irina I SeryshevaNational Center for Macromolecular Imaging, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Steven J Ludtke
Matthew L Baker
Yao Cong
Maya Topf
David Eramian
Andrej Sali
Susan L Hamilton
Wah Chiu
Baylor College of Medicine · USQB3 · USBirkbeck, University of London · GB

Funding

Center for Protein Folding Machinery (RMI)PN2EY016525 · NEI · BAYLOR COLLEGE OF MEDICINE · PI CHIU, WAH · 2005 to 2015
$33.6M
ZERNIKE PHASE PLATE CRYOEM IN OKAZAKIP41RR002250 · NCRR · UNIVERSITY OF ARIZONA · PI CHIU, WAH · 1985 to 2011
$22.1M
SPARX--AUTOMATED SINGLE PARTICLE RECONSTRUCTION SOFTWAREP01GM064692 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI FRANK, JACHIM · 2003 to 2007
$8.7M
MODULATION OF SARCOPLASMIC RETICULUM CALCIUM RELEASER01AR041802 · NIAMS · BAYLOR COLLEGE OF MEDICINE · PI HAMILTON, SUSAN L, INGALLS, CHRISTOPHER · 1993 to 2014
$5.6M
SUPPORT AND DEVELOPMENT OF EMAN FOR ELECTRON MICROSCOPY IMAGE PROCESSINGR01GM080139 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI LUDTKE, STEVEN J · 2006 to 2022
$5.4M
Structure-Function Studies Of IP3R ChannelsR01GM072804 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI SERYSHEVA, IRINA I · 2005 to 2023
$4.8M
MOLECULAR DETERMINANTS OF E-C COUPLINGR01AR044864 · NIAMS · BAYLOR COLLEGE OF MEDICINE · PI HAMILTON, SUSAN L · 1999 to 2008
$4.0M
NCRR NIH HHS P41 RR002250NCRR NIH HHS P41RR02250NEI NIH HHS PN2 EY016525NEI NIH HHS PN2EY016525NIAMS NIH HHS R01 AR041802NIAMS NIH HHS R01 AR044864NIAMS NIH HHS R01AR41802NIAMS NIH HHS R01AR44864NIGMS NIH HHS P01 GM064692NIGMS NIH HHS P01GM064692NIGMS NIH HHS P01GM99116NIGMS NIH HHS R01 GM072804NIGMS NIH HHS R01GM072804NIGMS NIH HHS R01 GM080139
6 · The paper itself

Abstract

The skeletal muscle Ca(2+) release channel (RyR1), a homotetramer, regulates the release of Ca(2+) from the sarcoplasmic reticulum to initiate muscle contraction. In this work, we have delineated the RyR1 monomer boundaries in a subnanometer-resolution electron cryomicroscopy (cryo-EM) density map. In the cytoplasmic region of each RyR1 monomer, 36 alpha-helices and 7 beta-sheets can be resolved. A beta-sheet was also identified close to the membrane-spanning region that resembles the cytoplasmic pore structures of inward rectifier K(+) channels. Three structural folds, generated for amino acids 12-565 using comparative modeling and cryo-EM density fitting, localize close to regions implicated in communication with the voltage sensor in the transverse tubules. Eleven of the 15 disease-related residues for these domains are mapped to the surface of these models. Four disease-related residues are found in a basin at the interfaces of these regions, creating a pocket in which the immunophilin FKBP12 can fit. Taken together, these results provide a structural context for both channel gating and the consequences of certain malignant hyperthermia and central core disease-associated mutations in RyR1.

Indexed as

Cryoelectron MicroscopyModels, MolecularCytoplasmMuscle, SkeletalProtein Structure, SecondaryProtein Structure, TertiaryRyanodine Receptor Calcium Release ChannelRyanodine Receptor Calcium Release Channel

Identifiers

PMID18621707
PMCPMC2474495
OpenAlexW2133300050

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.