Evidence map›Paper›PMID 18617513›Full record

ArticleThe Journal of biological chemistry2008

The RING domain and first zinc finger of TRAF6 coordinate signaling by interleukin-1, lipopolysaccharide, and RANKL.

Betty Lamothe, Alejandro D Campos, William K Webster, Ambily Gopinathan, Lana Hur, Bryant G Darnay

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 112 citations in OpenAlex.

  1. Article
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  11. The IRAK-M death domain: a tale of three surfaces.Frontiers in molecular biosciences · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Emerging Roles of Non-proteolytic Ubiquitination in Tumorigenesis.Frontiers in cell and developmental biology · 2022
    Review
  19. Article
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Betty LamotheDepartment of Experimental Therapeutics, The University of Texas M.D. Anderson Cancer Center, Houston, Texas 77030, USA.
Alejandro D Campos
William K Webster
Ambily Gopinathan
Lana Hur
Bryant G Darnay
The University of Texas MD Anderson Cancer Center · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Kathrin Milbury · 1985 to 2026
$290.8M
TRAF6 E3 LIGASE FUNCTION IN OSTEOCLASTOGENESISR01AR053540 · NIAMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DARNAY, BRYANT G · 2007 to 2010
$852k
NCI NIH HHS CA16672DAFNCI NIH HHS P30 CA016672NIAMS NIH HHS R01 AR053540
6 · The paper itself

Abstract

TRAF6, a crucial adaptor molecule in innate and adaptive immunity, contains three distinct functional domains. The C-terminal TRAF domain facilitates oligomerization and sequence-specific interaction with receptors or other adaptor proteins. In conjunction with the dimeric E2 enzyme Ubc13-Uev1A, the N-terminal RING domain of TRAF6 functions as an E3 ubiquitin (Ub) ligase that facilitates its own site-specific ubiquitination through the generation of a Lys-63-linked poly-Ub chain. This modification does not cause its proteasomal degradation but rather serves as a scaffold to activate both the IKK and stress kinase pathways. Connecting the N-and C-terminal regions, the four internal zinc finger (ZF) motifs have yet to be functionally defined. In this study, we examined the role of the ZF domains in interleukin-1, lipopolysaccharide, and RANKL signaling by reconstitution of TRAF6-deficient cells with point mutations or deletions of these ZF motifs. Although ZF domains 2-4 are dispensable for activating IKK, p38, and JNK by interleukin-1 and lipopolysaccharide, the first ZF domain together with an intact RING domain of TRAF6 is essential for activating these pathways. Furthermore, TRAF6 autoubiquitination and its interaction with Ubc13 are dependent on ZF1 and an intact RING domain. Additionally, expression of TRAF6 lacking ZF2-4 in TRAF6-deficient monocytes rescues RANKL-mediated osteoclast differentiation and LPS-stimulated interleukin-6 production. These data provide evidence for the critical role of the Ub ligase activity of TRAF6, which is coordinated via the RING domain and ZF1 to supply the necessary elements in signaling by cytokines dependent upon TRAF6.

Indexed as

AnimalsCell DifferentiationCell LineHumansI-kappa B KinaseImmunity, InnateInterleukin-1Interleukin-6LipopolysaccharidesMAP Kinase Kinase 4MiceMice, KnockoutMonocytesOsteoclastsp38 Mitogen-Activated Protein KinasesProteasome Endopeptidase ComplexI-kappa B KinaseIL6 protein, humanInterleukin-1Interleukin-6LipopolysaccharidesMAP Kinase Kinase 4p38 Mitogen-Activated Protein KinasesProteasome Endopeptidase ComplexRANK LigandTNF Receptor-Associated Factor 6TNFSF11 protein, humanTnfsf11 protein, mouseTranscription FactorsUBE2N protein, humanUbe2n protein, mouseUBE2V1 protein, humanUBE2V1 protein, mouseUbiquitin-Conjugating Enzymes

Identifiers

PMID18617513
PMCPMC2529010
OpenAlexW2080148830

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.