ReviewAnnual review of cell and developmental biology2008
Systems approaches to identifying gene regulatory networks in plants.
Review in Annual review of cell and developmental biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
47 citing papers in PubMed.
- Many roads lead to a plant cistrome: mapping and interpreting transcription factor binding in plants.Genome biology · 2026Review
- Unlocking gene regulatory networks for crop resilience and sustainable agriculture.Nature biotechnology · 2025Review
- Quantitative and spatially resolved detection of multiplexed microRNA from plant tissue via hybridization to hydrogel-bound DNA probes in nanoliter well arrays.Microsystems & nanoengineering · 2024Article
- To me, or not to me: Effects of mRNA adenine methylation on biotic stress responses.The Plant cell · 2023Article
- PERSISTENT PATH LAPLACIAN.Foundations of data science (Springfield, Mo.) · 2023Article
- Towards modelling emergence in plant systems.Quantitative plant biology · 2023Article
- Plant multiscale networks: charting plant connectivity by multi-level analysis and imaging techniques.Science China. Life sciences · 2021Review
- Underpinning the molecular programming attributing heat stress associated thermotolerance in tea (Camellia sinensis (L.) O. Kuntze).Horticulture research · 2021Article
- What is quantitative plant biology?Quantitative plant biology · 2021Review
- Network-based approaches for understanding gene regulation and function in plants.The Plant journal : for cell and molecular biology · 2020Review
- Inductive inference of gene regulatory network using supervised and semi-supervised graph neural networks.Computational and structural biotechnology journal · 2020Article
- Gene Regulatory Networks Reconstruction Using the Flooding-Pruning Hill-Climbing Algorithm.Genes · 2018Article
- Article
- An improved Bayesian network method for reconstructing gene regulatory network based on candidate auto selection.BMC genomics · 2017Article
- Systems biology and genome-wide approaches to unveil the molecular players involved in the pre-germinative metabolism: implications on seed technology traits.Plant cell reports · 2017Review
- Molecular mechanisms underlying COPD-muscle dysfunction unveiled through a systems medicine approach.Bioinformatics (Oxford, England) · 2017Article
- Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses.Nucleic acids research · 2016Article
- Up-regulating the abscisic acid inactivation gene ZmABA8ox1b contributes to seed germination heterosis by promoting cell expansion.Journal of experimental botany · 2016Article
- Inference of Longevity-Related Genes from a Robust Coexpression Network of Seed Maturation Identifies Regulators Linking Seed Storability to Biotic Defense-Related Pathways.The Plant cell · 2015Article
- LOTUS-DB: an integrative and interactive database for Nelumbo nucifera study.Database : the journal of biological databases and curation · 2015Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
Complex gene regulatory networks are composed of genes, noncoding RNAs, proteins, metabolites, and signaling components. The availability of genome-wide mutagenesis libraries; large-scale transcriptome, proteome, and metabalome data sets; and new high-throughput methods that uncover protein interactions underscores the need for mathematical modeling techniques that better enable scientists to synthesize these large amounts of information and to understand the properties of these biological systems. Systems biology approaches can allow researchers to move beyond a reductionist approach and to both integrate and comprehend the interactions of multiple components within these systems. Descriptive and mathematical models for gene regulatory networks can reveal emergent properties of these plant systems. This review highlights methods that researchers are using to obtain large-scale data sets, and examples of gene regulatory networks modeled with these data. Emergent properties revealed by the use of these network models and perspectives on the future of systems biology are discussed.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.