Evidence map›Paper›PMID 18614796›Full record

ArticleMolecular biology of the cell2008

Drosophila Sec16 mediates the biogenesis of tER sites upstream of Sar1 through an arginine-rich motif.

Viorica Ivan, Gert de Voer, Despina Xanthakis, Kirsten M Spoorendonk, Vangelis Kondylis, Catherine Rabouille

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed.

  1. Article
  2. Review
  3. The Memory Gene,Biomolecules · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Sorting and Export of Proteins at the Endoplasmic Reticulum.Cold Spring Harbor perspectives in biology · 2023
    Review
  13. Article
  14. Article
  15. Life (Basel, Switzerland) · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Viorica IvanDepartment of Cell Biology and Institute of Biomembrane, University Medical Centre Utrecht, 3584CX Utrecht, The Netherlands.
Gert de Voer
Despina Xanthakis
Kirsten M Spoorendonk
Vangelis Kondylis
Catherine Rabouille

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

tER sites are specialized cup-shaped ER subdomains characterized by the focused budding of COPII vesicles. Sec16 has been proposed to be involved in the biogenesis of tER sites by binding to COPII coat components and clustering nascent-coated vesicles. Here, we show that Drosophila Sec16 (dSec16) acts instead as a tER scaffold upstream of the COPII machinery, including Sar1. We show that dSec16 is required for Sar1-GTP concentration to the tER sites where it recruits in turn the components of the COPII machinery to initiate coat assembly. Last, we show that the dSec16 domain required for its localization maps to an arginine-rich motif located in a nonconserved region. We propose a model in which dSec16 binds ER cups via its arginine-rich domain, interacts with Sar1-GTP that is generated on ER membrane by Sec12 and concentrates it in the ER cups where it initiates the formation of COPII vesicles, thus acting as a tER scaffold.

Indexed as

Gene Expression RegulationAmino Acid MotifsAmino Acid SequenceAnimalsArginineCOP-Coated VesiclesDrosophila melanogasterDrosophila ProteinsEndoplasmic ReticulumGuanine Nucleotide Exchange FactorsHumansMembrane ProteinsMolecular Sequence DataMonomeric GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsSequence Homology, Amino AcidArginineCG9175 protein, DrosophilaDrosophila ProteinsGuanine Nucleotide Exchange FactorsMembrane ProteinsMonomeric GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsSar1 protein, DrosophilaSEC16A protein, humanSec16 protein, DrosophilaSEC16 protein, S cerevisiaeVesicular Transport Proteins

Identifiers

PMID18614796
PMCPMC2555954

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.