Evidence map›Paper›PMID 18614714›Full record

ArticlePlant physiology2008

Manganese efficiency in barley: identification and characterization of the metal ion transporter HvIRT1.

Pai Pedas, Cecilie K Ytting, Anja T Fuglsang, Thomas P Jahn, Jan K Schjoerring, Søren Husted

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
12.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 212 citations in OpenAlex.

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  8. TheInternational journal of molecular sciences · 2022
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  11. Identification of Zinc Efficiency-Associated Loci (International journal of molecular sciences · 2022
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  12. Effects of Fe and Mn Deficiencies on the Root Protein Profiles of Tomato (International journal of molecular sciences · 2022
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  13. Article
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  15. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2021
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  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Pai PedasPlant and Soil Science Laboratory, Department of Agriculture and Ecology , Faculty of Life Sciences, University of Copenhagen, DK-1871 Frederiksberg C, Copenhagen, Denmark. pp@life.ku.dk
Cecilie K Ytting
Anja T Fuglsang
Thomas P Jahn
Jan K Schjoerring
Søren Husted
University of Copenhagen · DKNational Research Foundation · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Manganese (Mn) deficiency is an important plant nutritional disorder in many parts of the world. Barley (Hordeum vulgare) genotypes differ considerably in their ability to grow in soils with low Mn(2+) availability. Differential genotypic Mn efficiency can be attributed to differences in Mn(2+) uptake kinetics in the low nanomolar concentration range. However, the molecular basis for these differences has not yet been clarified. We present here the identification and characterization of the first barley gene encoding a plasma membrane-localized metal transport protein able to transport Mn(2+). The gene is designated HvIRT1 (for IRON-REGULATED TRANSPORTER1) because it belongs to the ZIP gene family and has a high similarity to rice (Oryza sativa) OsIRT1. A novel yeast uptake assay based on inductively coupled plasma-mass spectrometry analysis of 31 different metal and metalloid ions showed that the HvIRT1 protein, in addition to Mn(2+), also transported Fe(2+)/Fe(3+), Zn(2+), and Cd(2+). Both Mn and iron deficiency induced an up-regulation of HvIRT1 in two barley genotypes differing in Mn efficiency, but the expression levels in all cases were highest (up to 40%) in the Mn-efficient genotype. The higher expression of HvIRT1 correlated with an increased Mn(2+) uptake rate. We conclude that HvIRT1 is an important component controlling Mn(2+) uptake in barley roots and contributes to genotypic differences in Mn(2+) uptake kinetics.

Indexed as

Amino Acid SequenceCation Transport ProteinsCell MembraneConserved SequenceGenetic Complementation TestGenotypeHordeumManganeseMetals, HeavyMolecular Sequence DataOryzaPlant RootsSaccharomyces cerevisiaeSequence Analysis, ProteinSequence Homology, Amino AcidTrace ElementsCation Transport ProteinsManganeseMetals, HeavyTrace Elements

Identifiers

PMID18614714
PMCPMC2528110
OpenAlexW2126147905

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.