Evidence map›Paper›PMID 18614647›Full record

ArticleJournal of clinical microbiology2008

Comparison of conventional, nested, and real-time PCR assays for rapid and accurate detection of Vibrio vulnificus.

Hyong Sun Kim, Dong-Min Kim, Ganesh Prasad Neupane, Yu-mi Lee, Nam-Woong Yang, Sook Jin Jang, Sook-In Jung, Kyung-Hwa Park, Hae-Ryoung Park, Chang Seop Lee and 1 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of clinical microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Comparison of real-time PCR and nested PCR based on the HlyA gene for the detection of Listeria monocytogenes. Application on cheese samples.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  6. Molecular epidemiology ofVeterinary world · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Vibrio vulnificus infection: a persistent threat to public health.The Korean journal of internal medicine · 2018
    Review
  15. Clinical Usefulness of Real-Time Polymerase Chain Reaction for the Diagnosis ofThe American journal of tropical medicine and hygiene · 2017
    Article
  16. Article
  17. Article
  18. Article
  19. Quantitative PCR and in vivo efficacy of antibiotics in the treatment of Vibrio vulnificus infection in a mouse model.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2012
    Article
  20. Tumor necrosis factor-α and mortality in patients infected with Vibrio vulnificus.The American journal of tropical medicine and hygiene · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Hyong Sun KimDepartment of Internal Medicine, Division of Infectious Disease, Chosun University College of Medicine, Gwang-ju, Republic of Korea.
Dong-Min Kim
Ganesh Prasad Neupane
Yu-mi Lee
Nam-Woong Yang
Sook Jin Jang
Sook-In Jung
Kyung-Hwa Park
Hae-Ryoung Park
Chang Seop Lee
Sun Hee Lee
Chonnam National University · KRChosun University · KRJeonbuk National University · KRPusan National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We conducted a prospective study to target toxR in the blood of patients with skin and soft tissue infections who were admitted to four tertiary hospitals to assess the clinical usefulness of real-time quantitative PCR (Q-PCR) as a diagnostic technique. We performed conventional PCR (C-PCR), nested PCR (N-PCR), and Q-PCR assays and compared the results to those obtained using the "gold standard" of microbiological culture. The lower detection limit for the Q-PCR assay was 5 x 10(0) copies/microl. By use of blood samples of patients with skin and soft tissue infections, the sensitivities of the C-PCR and N-PCR assays against the target toxR gene of V. vulnificus as diagnostic tools were determined to be 45% and 86%, respectively. The C-PCR and N-PCR assays had specificities of 100% and 73%, respectively. When we adopted a crossing-point (cp) cutoff value of <38 cp as a positive result, the Q-PCR assay had 100% sensitivity and specificity. Q-PCR to detect V. vulnificus-specific genes is not only the most sensitive and specific of the techniques but also the most rapid diagnostic method. Therefore, the appropriate application of the Q-PCR assay using blood is useful for the rapid diagnosis and subsequent treatment of V. vulnificus sepsis.

Indexed as

Polymerase Chain ReactionVibrio vulnificusDNA PrimersDNA ProbesHumansMolecular Sequence DataSensitivity and SpecificityVibrio InfectionsDNA PrimersDNA Probes

Identifiers

PMID18614647
PMCPMC2546753
OpenAlexW2118510773

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.