Evidence map›Paper›PMID 18614641›Full record

ArticleJournal of virology2008

Frequency and spectrum of genomic integration of recombinant adeno-associated virus serotype 8 vector in neonatal mouse liver.

Katsuya Inagaki, Chuncheng Piao, Nicole M Kotchey, Xiaolin Wu, Hiroyuki Nakai

Abstract read
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Gene therapy for liver diseases - progress and challenges.Nature reviews. Gastroenterology & hepatology · 2023
    Review
  4. Article
  5. Article
  6. Article
  7. AAV integration in human hepatocytes.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Article
  8. The intersection of vector biology, gene therapy, and hemophilia.Research and practice in thrombosis and haemostasis · 2021
    Review
  9. Article
  10. Gene therapy for inherited metabolic diseases.Journal of mother and child · 2020
    Review
  11. Article
  12. Emerging Issues in AAV-MediatedMolecular therapy. Methods & clinical development · 2018
    Review
  13. Article
  14. In Utero Transfer of Adeno-Associated Viral Vectors Produces Long-Term Factor IX Levels in a Cynomolgus Macaque Model.Molecular therapy : the journal of the American Society of Gene Therapy · 2017
    Article
  15. Article
  16. Article
  17. Engineering Stem Cells for Biomedical Applications.Advanced healthcare materials · 2016
    Review
  18. Recombinant AAV as a platform for translating the therapeutic potential of RNA interference.Molecular therapy : the journal of the American Society of Gene Therapy · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Katsuya InagakiDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, W1244 BSTWR, 200 Lothrop Street, Pittsburgh, PA 15261, USA. nakaih@pitt.edu
Chuncheng Piao
Nicole M Kotchey
Xiaolin Wu
Hiroyuki Nakai
University of Pittsburgh · USScience Applications International Corporation (United States) · US

Funding

HEPATIC GENE TRANSFER FOR TREATMENT OF HEMOPHILIAS A &BR01HL064274 · NHLBI · STANFORD UNIVERSITY · PI Mark A Kay · 2000 to 2026
$13.6M
Vector and Host Cellular Biology in AAV Vector Transduction in VivoR01DK078388 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NAKAI, HIROYUKI · 2008 to 2012
$1.4M
Establishment of the Risk of AAV Vector IntegrationR21DK068636 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NAKAI, HIROYUKI · 2004 to 2005
$296k
Vector and host cellular biology in AAV vector transduction in vivoR56DK078388 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NAKAI, HIROYUKI · 2007 to 2007
$111k
NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400NHLBI NIH HHS HL64274NHLBI NIH HHS R01 HL064274NIDDK NIH HHS R01 DK078388NIDDK NIH HHS R21 DK068636NIDDK NIH HHS R56 DK078388
6 · The paper itself

Abstract

Neonatal injection of recombinant adeno-associated virus serotype 8 (rAAV8) vectors results in widespread transduction in multiple organs and therefore holds promise in neonatal gene therapy. On the other hand, insertional mutagenesis causing liver cancer has been implicated in rAAV-mediated neonatal gene transfer. Here, to better understand rAAV integration in neonatal livers, we investigated the frequency and spectrum of genomic integration of rAAV8 vectors in the liver following intraperitoneal injection of 2.0 x 10(11) vector genomes at birth. This dose was sufficient to transduce a majority of hepatocytes in the neonatal period. In the first approach, we injected mice with a beta-galactosidase-expressing vector at birth and quantified rAAV integration events by taking advantage of liver regeneration in a chronic hepatitis animal model and following partial hepatectomy. In the second approach, we performed a new, quantitative rAAV vector genome rescue assay by which we identified rAAV integration sites and quantified integrations. As a result, we find that at least approximately 0.05% of hepatocytes contained rAAV integration, while the average copy number of integrated double-stranded vector genome per cell in the liver was approximately 0.2, suggesting concatemer integration. Twenty-three of 34 integrations (68%) occurred in genes, but none of them were near the mir-341 locus, the common rAAV integration site found in mouse hepatocellular carcinoma. Thus, rAAV8 vector integration occurs preferentially in genes at a frequency of 1 in approximately 10(3) hepatocytes when a majority of hepatocytes are once transduced in the neonatal period. Further studies are warranted to elucidate the relationship between vector dose and integration frequency or spectrum.

Indexed as

Genome, ViralAnimalsAnimals, NewbornCell Line, TumorDependovirusHeartHepatitisHepatocytesHumansLiverLiver RegenerationMiceMice, Inbred C57BLMice, TransgenicMuscle, Skeletal

Identifiers

PMID18614641
PMCPMC2546949
OpenAlexW2068765585

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.