Evidence map›Paper›PMID 18614584›Full record

ArticleBioinformatics (Oxford, England)2008

Yale Image Finder (YIF): a new search engine for retrieving biomedical images.

Songhua Xu, James McCusker, Michael Krauthammer

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. Article
  3. Dental CLAIRES: Contrastive LAnguage Image REtrieval Search for Dental Research.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2023
    Article
  4. Figure and caption extraction from biomedical documents.Bioinformatics (Oxford, England) · 2019
    Article
  5. Review
  6. Sharing and reusing cell image data.Molecular biology of the cell · 2018
    Article
  7. Article
  8. Article
  9. Bar charts detection and analysis in biomedical literature of PubMed Central.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2017
    Article
  10. Article
  11. Mining biomedical images towards valuable information retrieval in biomedical and life sciences.Database : the journal of biological databases and curation · 2016
    Review
  12. Article
  13. Article
  14. Section level search functionality in Europe PMC.Journal of biomedical semantics · 2015
    Article
  15. Article
  16. Article
  17. Complementary ensemble clustering of biomedical data.Journal of biomedical informatics · 2013
    Article
  18. Article
  19. Article
  20. Finding and accessing diagrams in biomedical publications.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Songhua XuDepartment of Computer Science, Yale University, 51 Prospect Street, New Haven, CT 06520, USA.
James McCusker
Michael Krauthammer

Funding

Text Mining as a Translational Tool in BiomedicineK22LM009255 · NLM · YALE UNIVERSITY · PI KRAUTHAMMER, MICHAEL · 2006 to 2008
$440k
NLM NIH HHS 5K22LM009255NLM NIH HHS K22 LM009255
6 · The paper itself

Abstract

unlabelledYale Image Finder (YIF) is a publicly accessible search engine featuring a new way of retrieving biomedical images and associated papers based on the text carried inside the images. Image queries can also be issued against the image caption, as well as words in the associated paper abstract and title. A typical search scenario using YIF is as follows: a user provides few search keywords and the most relevant images are returned and presented in the form of thumbnails. Users can click on the image of interest to retrieve the high resolution image. In addition, the search engine will provide two types of related images: those that appear in the same paper, and those from other papers with similar image content. Retrieved images link back to their source papers, allowing users to find related papers starting with an image of interest. Currently, YIF has indexed over 140 000 images from over 34 000 open access biomedical journal papers. AVAILABILITY: http://krauthammerlab.med.yale.edu/imagefinder/

Indexed as

Database Management SystemsInternetNatural Language ProcessingRadiology Information SystemsSoftwareUser-Computer InterfaceAlgorithmsDocumentationInformation Storage and Retrieval

Identifiers

PMID18614584
PMCPMC2732221

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.