Evidence map›Paper›PMID 18614575›Full record

ArticleDevelopment (Cambridge, England)2008

Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development.

Le-Ben Wan, Hua Pan, Sridhar Hannenhalli, Yong Cheng, Jun Ma, Andrew Fedoriw, Victor Lobanenkov, Keith E Latham, Richard M Schultz, Marisa S Bartolomei

Open access · greenAbstract read
In one paragraph

Article in Development (Cambridge, England), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 1 synthesis or guideline pooled it, 142 citations in OpenAlex.

  1. An updated catalog ofFrontiers in molecular neuroscience · 2023
    Pooled it
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. 3D or Not 3D: Shaping the Genome during Development.Cold Spring Harbor perspectives in biology · 2022
    Review
  18. Article
  19. Article
  20. Review

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Le-Ben WanDepartment of Cell and Developmental Biology, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.
Hua Pan
Sridhar Hannenhalli
Yong Cheng
Jun Ma
Andrew Fedoriw
Victor Lobanenkov
Keith E Latham
Richard M Schultz
Marisa S Bartolomei
University of Pennsylvania · USNational Institute of Allergy and Infectious Diseases · US

Funding

Normal and Pathologic Functions of CTCF and Its Distinct Classes of DNA-targetsZIAAI000860 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI LOBANENKOV, VICTOR · 2009 to 2025
$15.4M
VANADIUM INTERACTION STUDIES IN RELATION TO THE INHIBITION OF NA+-K+-ATPASES06GM008216 · NIGMS · UNIVERSITY OF PUERTO RICO AT HUMACAO · PI ORTIZ-MARCIALES, MARGARITA · 1989 to 2010
$8.0M
Epigenetic Regulation of Imprinting in Mouse EmbryoR01HD042026 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI BARTOLOMEI, MARISA S. · 2002 to 2012
$3.5M
Epigenetic Effect of Ooplasm Manipulation on DevelopmentR01RR018907 · NCRR · TEMPLE UNIV OF THE COMMONWEALTH · PI LATHAM, KEITH E · 2004 to 2008
$1.8M
Algorithms to investigate transcriptional networksR21GM078203 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI HANNENHALLI, SRIDHAR · 2006 to 2007
$374k
NCRR NIH HHS R01 RR018907NCRR NIH HHS RR018907NICHD NIH HHS HD42026NICHD NIH HHS R01 HD042026NIGMS NIH HHS GM078203NIGMS NIH HHS GM08216NIGMS NIH HHS R21 GM078203NIGMS NIH HHS S06 GM008216
6 · The paper itself

Abstract

CTCF is a multifunctional nuclear factor involved in epigenetic regulation. Despite recent advances that include the systematic discovery of CTCF-binding sites throughout the mammalian genome, the in vivo roles of CTCF in adult tissues and during embryonic development are largely unknown. Using transgenic RNAi, we depleted maternal stores of CTCF from growing mouse oocytes, and identified hundreds of misregulated genes. Moreover, our analysis suggests that CTCF predominantly activates or derepresses transcription in oocytes. CTCF depletion causes meiotic defects in the egg, and mitotic defects in the embryo that are accompanied by defects in zygotic gene expression, and culminate in apoptosis. Maternal pronuclear transfer and CTCF mRNA microinjection experiments indicate that CTCF is a mammalian maternal effect gene, and that persistent transcriptional defects rather than persistent chromosomal defects perturb early embryonic development. This is the first study detailing a global and essential role for CTCF in mouse oocytes and preimplantation embryos.

Indexed as

Embryonic DevelopmentAnimalsApoptosisCCCTC-Binding FactorDNA-Binding ProteinsFemaleGene Expression Regulation, DevelopmentalGenomic ImprintingMeiosisMiceMice, TransgenicMitosisOocytesOogenesisRepressor ProteinsCCCTC-Binding FactorCtcf protein, mouseDNA-Binding ProteinsRepressor Proteins

Identifiers

PMID18614575
PMCPMC2596970
OpenAlexW2127497792

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.