Evidence map›Paper›PMID 18613972›Full record

ArticleGenome biology2008

At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana.

Sascha Laubinger, Georg Zeller, Stefan R Henz, Timo Sachsenberg, Christian K Widmer, Naïra Naouar, Marnik Vuylsteke, Bernhard Schölkopf, Gunnar Rätsch, Detlef Weigel

Abstract read
In one paragraph

Article in Genome biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Angiosperm-Wide and Family-Level Analyses ofFrontiers in plant science · 2019
    Article
  5. Plant cell surface molecular cypher: Receptor-like proteins and their roles in immunity and development.Plant science : an international journal of experimental plant biology · 2018
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
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  12. Article
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  15. Arabidopsis non-coding RNA regulation in abiotic stress responses.International journal of molecular sciences · 2013
    Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sascha LaubingerDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, Spemannstr, 37-39, 72076 Tübingen, Germany. sascha.laubinger@tuebingen.mpg.de
Georg Zeller
Stefan R Henz
Timo Sachsenberg
Christian K Widmer
Naïra Naouar
Marnik Vuylsteke
Bernhard Schölkopf
Gunnar Rätsch
Detlef Weigel

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene expression maps for model organisms, including Arabidopsis thaliana, have typically been created using gene-centric expression arrays. Here, we describe a comprehensive expression atlas, Arabidopsis thaliana Tiling Array Express (At-TAX), which is based on whole-genome tiling arrays. We demonstrate that tiling arrays are accurate tools for gene expression analysis and identified more than 1,000 unannotated transcribed regions. Visualizations of gene expression estimates, transcribed regions, and tiling probe measurements are accessible online at the At-TAX homepage.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantOligonucleotide Array Sequence AnalysisArabidopsisGene Expression Regulation, DevelopmentalGenome, PlantOnline SystemsPolyadenylationRNA, MessengerSoftwareRNA, Messenger

Identifiers

PMID18613972
PMCPMC2530869

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.