ReviewJournal of the Royal Society, Interface2008
Biomolecular simulation and modelling: status, progress and prospects.
Review in Journal of the Royal Society, Interface, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
15 citing papers in PubMed.
- Discovery of Novel Inhibitors ofMolecules (Basel, Switzerland) · 2025Article
- Utilizing Molecular Dynamics Simulations, Machine Learning, Cryo-EM, and NMR Spectroscopy to Predict and Validate Protein Dynamics.International journal of molecular sciences · 2024Review
- Quantum Computing in the Next-Generation Computational Biology Landscape: From Protein Folding to Molecular Dynamics.Molecular biotechnology · 2024Review
- Deep learning-based molecular dynamics simulation for structure-based drug design against SARS-CoV-2.Computational and structural biotechnology journal · 2022Review
- Coupling Coarse-Grained to Fine-Grained Models via Hamiltonian Replica Exchange.Journal of chemical theory and computation · 2020Article
- Modeling Chemical Reactions by QM/MM Calculations: The Case of the Tautomerization in Fireflies Bioluminescent Systems.Frontiers in chemistry · 2018Article
- Extra views on structure and dynamics of DNA loops on nucleosomes studied with molecular simulations.Nucleus (Austin, Tex.) · 2016Review
- Structure and Function in Homodimeric Enzymes: Simulations of Cooperative and Independent Functional Motions.PloS one · 2015Article
- Mathematical and computational modeling in biology at multiple scales.Theoretical biology & medical modelling · 2014Review
- A practical guide to modelling enzyme-catalysed reactions.Chemical Society reviews · 2012Review
- Taking Ockham's razor to enzyme dynamics and catalysis.Nature chemistry · 2012Article
- Dual-resolution molecular dynamics simulation of antimicrobials in biomembranes.Journal of the Royal Society, Interface · 2011Article
- Dynameomics: a comprehensive database of protein dynamics.Structure (London, England : 1993) · 2010Article
- Coarse-Grained Structural Modeling of Molecular Motors Using Multibody Dynamics.Cellular and molecular bioengineering · 2009Article
- Introduction. Biomolecular simulation.Journal of the Royal Society, Interface · 2008Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
Abstract
Molecular simulation is increasingly demonstrating its practical value in the investigation of biological systems. Computational modelling of biomolecular systems is an exciting and rapidly developing area, which is expanding significantly in scope. A range of simulation methods has been developed that can be applied to study a wide variety of problems in structural biology and at the interfaces between physics, chemistry and biology. Here, we give an overview of methods and some recent developments in atomistic biomolecular simulation. Some recent applications and theoretical developments are highlighted.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.