Evidence map›Paper›PMID 18611385›Full record

ArticleStructure (London, England : 1993)2008

Single copies of Sec61 and TRAP associate with a nontranslating mammalian ribosome.

Jean-François Ménétret, Ramanujan S Hegde, Mike Aguiar, Steven P Gygi, Eunyong Park, Tom A Rapoport, Christopher W Akey

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 103 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Mechanism of Protein Translocation by the Sec61 Translocon Complex.Cold Spring Harbor perspectives in biology · 2023
    Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. The enigmatic ATP supply of the endoplasmic reticulum.Biological reviews of the Cambridge Philosophical Society · 2019
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Jean-François MénétretDepartment of Physiology and Biophysics, Boston University School of Medicine, 700 Albany Street, Boston, MA 02118-2526, USA.
Ramanujan S Hegde
Mike Aguiar
Steven P Gygi
Eunyong Park
Tom A Rapoport
Christopher W Akey
Harvard University · USBoston University · USNational Institutes of Health · US

Funding

The Structural Basis of Protein BiogenesisR01GM045377 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI AKEY, CHRISTOPHER W · 1991 to 2023
$6.4M
Regulation of Protein Translocation into the ERZIAHD008752 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI HEGDE, RAMANUJAN S · 2009 to 2011
$561k
NIGMS NIH HHS R01 GM045377
6 · The paper itself

Abstract

During cotranslational protein translocation, the ribosome associates with a membrane channel, formed by the Sec61 complex, and recruits the translocon-associated protein complex (TRAP). Here we report the structure of a ribosome-channel complex from mammalian endoplasmic reticulum in which the channel has been visualized at 11 A resolution. In this complex, single copies of Sec61 and TRAP associate with a nontranslating ribosome and this stoichiometry was verified by quantitative mass spectrometry. A bilayer-like density surrounds the channel and can be attributed to lipid and detergent. The crystal structure of an archaeal homolog of the Sec61 complex was then docked into the map. In this model, two cytoplasmic loops of Sec61 may interact with RNA helices H6, H7, and H50, while the central pore is located below the ribosome tunnel exit. Hence, this copy of Sec61 is positioned to capture and translocate the nascent chain. Finally, we show that mammalian and bacterial ribosome-channel complexes have similar architectures.

Indexed as

AnimalsArchaeal ProteinsCalcium-Binding ProteinsDogsEndoplasmic ReticulumMembrane GlycoproteinsMembrane ProteinsModels, MolecularProtein TransportReceptors, Cytoplasmic and NuclearReceptors, PeptideRibosomesRibosome Subunits, Large, EukaryoticSEC Translocation ChannelsTranslocation, GeneticArchaeal ProteinsCalcium-Binding ProteinsMembrane GlycoproteinsMembrane ProteinsReceptors, Cytoplasmic and NuclearReceptors, PeptideSEC Translocation Channelssignal sequence receptor

Identifiers

PMID18611385
PMCPMC2527209
OpenAlexW2121277080

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.