Evidence map›Paper›PMID 18604275›Full record

ArticlePLoS genetics2008

Genetic interactions of MAF1 identify a role for Med20 in transcriptional repression of ribosomal protein genes.

Ian M Willis, Gordon Chua, Amy H Tong, Renee L Brost, Timothy R Hughes, Charles Boone, Robyn D Moir

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.1field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Ian M WillisDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, New York, United States of America. willis@aecom.yu.edu
Gordon Chua
Amy H Tong
Renee L Brost
Timothy R Hughes
Charles Boone
Robyn D Moir
University of Toronto · CAAlbert Einstein College of Medicine · US

Funding

STRUCTURE/FUNCTION OF POL III TRANSCRIPTION FACTORSR01GM042728 · NIGMS · YESHIVA UNIVERSITY · PI WILLIS, IAN M · 1989 to 2008
$3.3M
NIGMS NIH HHS GM42728NIGMS NIH HHS R01 GM042728
6 · The paper itself

Abstract

Transcriptional repression of ribosomal components and tRNAs is coordinately regulated in response to a wide variety of environmental stresses. Part of this response involves the convergence of different nutritional and stress signaling pathways on Maf1, a protein that is essential for repressing transcription by RNA polymerase (pol) III in Saccharomyces cerevisiae. Here we identify the functions buffering yeast cells that are unable to down-regulate transcription by RNA pol III. MAF1 genetic interactions identified in screens of non-essential gene-deletions and conditionally expressed essential genes reveal a highly interconnected network of 64 genes involved in ribosome biogenesis, RNA pol II transcription, tRNA modification, ubiquitin-dependent proteolysis and other processes. A survey of non-essential MAF1 synthetic sick/lethal (SSL) genes identified six gene-deletions that are defective in transcriptional repression of ribosomal protein (RP) genes following rapamycin treatment. This subset of MAF1 SSL genes included MED20 which encodes a head module subunit of the RNA pol II Mediator complex. Genetic interactions between MAF1 and subunits in each structural module of Mediator were investigated to examine the functional relationship between these transcriptional regulators. Gene expression profiling identified a prominent and highly selective role for Med20 in the repression of RP gene transcription under multiple conditions. In addition, attenuated repression of RP genes by rapamycin was observed in a strain deleted for the Mediator tail module subunit Med16. The data suggest that Mediator and Maf1 function in parallel pathways to negatively regulate RP mRNA and tRNA synthesis.

Indexed as

Transcription, GeneticGene Expression ProfilingGene Regulatory NetworksMediator ComplexProtein SubunitsRepressor ProteinsRibosomal ProteinsRNA, MessengerRNA, TransferSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSirolimusTranscription FactorsMAF1 protein, S cerevisiaeMediator ComplexProtein SubunitsRepressor ProteinsRibosomal ProteinsRNA, MessengerRNA, TransferSaccharomyces cerevisiae ProteinsSirolimusSRB2 protein, S cerevisiaeTranscription Factors

Identifiers

PMID18604275
PMCPMC2435279
OpenAlexW1973317302

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.