Evidence map›Paper›PMID 18599647›Full record

ArticlePlant physiology2008

Proteome-wide characterization of seed aging in Arabidopsis: a comparison between artificial and natural aging protocols.

Loïc Rajjou, Yoann Lovigny, Steven P C Groot, Maya Belghazi, Claudette Job, Dominique Job

Abstract readComparative Study
In one paragraph

Article in Plant physiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 150 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
150citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

150 citing papers in PubMed, 1 synthesis or guideline pooled it.

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90 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Loïc RajjouUMR 204, INRA-AgroParisTech, Laboratoire de Biologie des Semences, AgroParisTech, Chaire de Physiologie Végétale, F-75231 Paris cedex 05, France. loic.rajjou@agroparistech.fr
Yoann Lovigny
Steven P C Groot
Maya Belghazi
Claudette Job
Dominique Job

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A variety of mechanisms have been proposed to account for the extension of life span in seeds (seed longevity). In this work, we used Arabidopsis (Arabidopsis thaliana) seeds as a model and carried out differential proteomics to investigate this trait, which is of both ecological and agricultural importance. In our system based on a controlled deterioration treatment (CDT), we compared seed samples treated for different periods of time up to 7 d. Germination tests showed a progressive decrease of germination vigor depending on the duration of CDT. Proteomic analyses revealed that this loss in seed vigor can be accounted for by protein changes in the dry seeds and by an inability of the low-vigor seeds to display a normal proteome during germination. Furthermore, CDT strongly increased the extent of protein oxidation (carbonylation), which might induce a loss of functional properties of seed proteins and enzymes and/or enhance their susceptibility toward proteolysis. These results revealed essential mechanisms for seed vigor, such as translational capacity, mobilization of seed storage reserves, and detoxification efficiency. Finally, this work shows that similar molecular events accompany artificial and natural seed aging.

Indexed as

GerminationProteomeAmino AcidsArabidopsisArabidopsis ProteinsGlycolysisOxidation-ReductionPlant ProteinsProtein BiosynthesisProtein CarbonylationRNA, MessengerSeedsSulfurtransferasesTime Factors3-mercaptopyruvate sulphurtransferaseAmino AcidsArabidopsis Proteinsdehydrin proteins, plantPlant ProteinsProteomeRNA, MessengerSulfurtransferases

Identifiers

PMID18599647
PMCPMC2528126

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.