Evidence map›Paper›PMID 18596086›Full record

ArticleJournal of virology2008

Mapping of the CXCR4 binding site within variable region 3 of the feline immunodeficiency virus surface glycoprotein.

Magnus Sundstrom, Rebecca L White, Aymeric de Parseval, K Jagannadha Sastry, Garrett Morris, Chris K Grant, John H Elder

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.5field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Magnus SundstromDepartment of Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Rebecca L White
Aymeric de Parseval
K Jagannadha Sastry
Garrett Morris
Chris K Grant
John H Elder
Scripps Research Institute · USThe University of Texas MD Anderson Cancer Center · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
MOLECULAR CHARACTERIZATION OF FIVR01AI025825 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI ELDER, JOHN H · 1987 to 2015
$6.0M
Mucosal Immunization with a Conserved HIV Envelope Peptide Cocktail VaccineR21AI065402 · NIAID · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SASTRY, JAGANNADHA K · 2006 to 2007
$604k
CD134-based fusion polypeptides as novel FIV immuno-therapeuticsR21AI069984 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI DE PARSEVAL, AYMERIC · 2006 to 2007
$440k
NCI NIH HHS CA 16672NCI NIH HHS P30 CA016672NIAID NIH HHS AI025825NIAID NIH HHS AI0426969NIAID NIH HHS AI065402NIAID NIH HHS AI069984NIAID NIH HHS R01 AI025825NIAID NIH HHS R21 AI065402NIAID NIH HHS R21 AI069984
6 · The paper itself

Abstract

Feline immunodeficiency virus (FIV) shares with T-cell tropic strains of human immunodeficiency virus type 1 (HIV-1) the use of the chemokine receptor CXCR4 for cellular entry. In order to map the interaction of the FIV envelope surface unit (SU) with CXCR4, full-length FIV SU-Fc as well as constructs with deletions of extended loop L2, V3, V4, or V5 were produced in stable CHO cell lines. Binding studies were performed using these proteins on 3201 cells (CXCR4(hi) CD134(-)), with or without the CXCR4 inhibitor AMD3100. The findings established that SU binding to CXCR4 specifically requires the V3 region of SU. Synthetic peptides spanning the V3 region as well as a panel of monoclonal antibodies (MAbs) to SU were used to further map the site of CXCR4 interaction. Both the SU V3-specific antibodies and the full-length V3 peptide potently blocked binding of SU to CXCR4 and virus entry. By using a set of nested peptides overlapping a region of SU specifically recognized by CD134-dependent neutralizing V3 MAbs, we showed that the neutralizing epitope and the region required for CXCR4 binding are within the same contiguous nine-amino-acid sequence of V3. Site-directed mutagenesis was used to reveal that serine 393 and tryptophan 394 at the predicted tip of V3 are required to facilitate entry into the target cell via CXCR4. Although the amino acid sequences are not identical between FIV and HIV, the ability of FIV to bind and utilize both feline and human CXCR4 makes the feline model an attractive venue for development of broad-based entry antagonists.

Indexed as

Epitope MappingAmino Acid SequenceAnimalsBinding SitesCatsCell LineCHO CellsCricetinaeCricetulusGene DeletionImmunodeficiency Virus, FelineMolecular Sequence DataMutagenesis, Site-DirectedPeptide FragmentsReceptors, CXCRRecombinant Fusion ProteinsPeptide FragmentsReceptors, CXCRRecombinant Fusion ProteinsViral Envelope Proteins

Identifiers

PMID18596086
PMCPMC2546885
OpenAlexW2030985070

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.