Evidence map›Paper›PMID 18593912›Full record

ArticleCancer research2008

Genomic and proteomic analysis reveals a threshold level of MYC required for tumor maintenance.

Catherine M Shachaf, Andrew J Gentles, Sailaja Elchuri, Debashis Sahoo, Yoav Soen, Orr Sharpe, Omar D Perez, Maria Chang, Dennis Mitchel, William H Robinson and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
  2. Article
  3. MYC function and regulation in physiological perspective.Frontiers in cell and developmental biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Catherine M ShachafDepartment of Medicine and Pathology, Division of Medical Oncology, Stanford University School of Medicine, Stanford University, Stanford, California 94305, USA.
Andrew J Gentles
Sailaja Elchuri
Debashis Sahoo
Yoav Soen
Orr Sharpe
Omar D Perez
Maria Chang
Dennis Mitchel
William H Robinson
David Dill
Garry P Nolan
Sylvia K Plevritis
Dean W Felsher
Bipar · FRStanford University · USBaxter (United States) · USHoward Hughes Medical Institute · US

Funding

FLUORESCENT PROBES &IMAGING FOR NETWORKS &PATHWAY(RMI)U54RR022241 · NCRR · MELLON PITTS CORPORATION (MPC CORP) · PI WAGGONER, ALAN S. · 2005 to 2011
$19.9M
TRIGGERING CELL DEATH IN B CELL LYMPHOMAP01CA034233 · NCI · STANFORD UNIVERSITY · PI NOLAN, GARRY P · 1985 to 2010
$19.5M
MYC's Role in the Initiation and Maintenance of CancerR01CA089305 · NCI · STANFORD UNIVERSITY · PI FELSHER, DEAN W · 2001 to 2011
$3.7M
Computational Modeling of Cancer BiologyU56CA112973 · NCI · STANFORD UNIVERSITY · PI PLEVRITIS, SYLVIA KATINA · 2004 to 2009
$2.9M
Engineering and Analysis of T cell CD3 and IL2R SignalsR01AI065824 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WITTRUP, KARL DANE · 2005 to 2008
$2.2M
Molecular and Cellular Basis of Oncogene AddictionR01CA105102 · NCI · STANFORD UNIVERSITY · PI FELSHER, DEAN W · 2004 to 2010
$2.0M
PLATELET INTERACTIONS WITH FIBRINOGEN AND CALCIUMR01HL028183 · NHLBI · STATE UNIVERSITY NEW YORK STONY BROOK · PI PEERSCHKE, ELLINOR I · 1985 to 1992
–
NHLBI PROTEOMICS INITIATIVE-N01HV28183N01HV028183 · HV · STANFORD UNIVERSITY · PI NOLAN, GARRY P · 2002 to 2006
–
NCI NIH HHS 1R01 CA105102NCI NIH HHS 1R01 CA89305-01A1NCI NIH HHS 2P01 CA034233-22A1NCI NIH HHS 3R01 CA89305-0351NCI NIH HHS 3U56 CA112973-03S1NCI NIH HHS P01 CA034233NCI NIH HHS R01 CA089305NCI NIH HHS R01 CA105102NCI NIH HHS U56 CA112973NCRR NIH HHS 1U54RR022241NCRR NIH HHS U54 RR022241NHLBI NIH HHS N01 HV028183NHLBI NIH HHS N01-HV-28183NIAID NIH HHS R01 AI065824NIAID NIH HHS R01-AI065824
6 · The paper itself

Abstract

MYC overexpression has been implicated in the pathogenesis of most types of human cancers. MYC is likely to contribute to tumorigenesis by its effects on global gene expression. Previously, we have shown that the loss of MYC overexpression is sufficient to reverse tumorigenesis. Here, we show that there is a precise threshold level of MYC expression required for maintaining the tumor phenotype, whereupon there is a switch from a gene expression program of proliferation to a state of proliferative arrest and apoptosis. Oligonucleotide microarray analysis and quantitative PCR were used to identify changes in expression in 3,921 genes, of which 2,348 were down-regulated and 1,573 were up-regulated. Critical changes in gene expression occurred at or near the MYC threshold, including genes implicated in the regulation of the G(1)-S and G(2)-M cell cycle checkpoints and death receptor/apoptosis signaling. Using two-dimensional protein analysis followed by mass spectrometry, phospho-flow fluorescence-activated cell sorting, and antibody arrays, we also identified changes at the protein level that contributed to MYC-dependent tumor regression. Proteins involved in mRNA translation decreased below threshold levels of MYC. Thus, at the MYC threshold, there is a loss of its ability to maintain tumorigenesis, with associated shifts in gene and protein expression that reestablish cell cycle checkpoints, halt protein translation, and promote apoptosis.

Indexed as

GenomicsProteomicsAnimalsApoptosisCell CycleCell Line, TumorCluster AnalysisDisease ProgressionGene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksMiceMice, TransgenicNeoplasmsOligonucleotide Array Sequence AnalysisProto-Oncogene Proteins c-mycMYC protein, humanProto-Oncogene Proteins c-myc

Identifiers

PMID18593912
PMCPMC4191850
OpenAlexW2103744026

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.