Evidence map›Paper›PMID 18591662›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Regulation of protein translation through mRNA structure influences MHC class I loading and T cell recognition.

Judy Tellam, Corey Smith, Michael Rist, Natasha Webb, Leanne Cooper, Tony Vuocolo, Geoff Connolly, David C Tscharke, Michael P Devoy, Rajiv Khanna

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 68 citations in OpenAlex.

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  12. Human DNA tumor viruses generate alternative reading frame proteins through repeat sequence recoding.Proceedings of the National Academy of Sciences of the United States of America · 2014
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Judy TellamAustralian Center for Vaccine Development and Tumor Immunology, Division of Infectious Diseases and Immunology, Clive Berghofer Cancer Research Center, Queensland Institute of Medical Research, Brisbane 4006 QLD, Australia.
Corey Smith
Michael Rist
Natasha Webb
Leanne Cooper
Tony Vuocolo
Geoff Connolly
David C Tscharke
Michael P Devoy
Rajiv Khanna
QIMR Berghofer Medical Research Institute · AUAustralian National University · AUCommonwealth Scientific and Industrial Research Organisation · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many viruses avoid immune surveillance during latent infection through reduction in the synthesis of virally encoded proteins. Although antigen presentation critically depends on the level of viral protein synthesis, the precise mechanism used to regulate the generation of antigenic peptide precursors remains elusive. Here, we demonstrate that a purine overloaded virally encoded mRNA lacking secondary structure significantly impacts the efficiency of protein translation and prevents endogenous antigen presentation. Reducing this purine bias through the generation of constructs expressing codon-modified sequences, while maintaining the encoded protein sequence, increased the stem-loop structure of the corresponding mRNA and dramatically enhanced self-synthesis of the viral protein. As a consequence, a higher number of HLA-peptide complexes were detected on the surface of cells expressing this viral protein. Furthermore, these cells were more efficiently recognized by virus-specific T cells compared with those expressing the same antigen expressed by a purine-biased mRNA. These findings delineate a mechanism by which viruses regulate self-synthesis of proteins and offer an effective strategy to evade CD8(+) T cell-mediated immune regulation.

Indexed as

Protein BiosynthesisAntigen PresentationBase SequenceCD8-Positive T-LymphocytesCell LineCodonEpitopesEpstein-Barr Virus Nuclear AntigensGene Expression RegulationHistocompatibility Antigens Class IHumansMolecular Sequence DataNucleic Acid ConformationOligonucleotides, AntisenseProtein Structure, TertiaryPurinesCodonEpitopesEpstein-Barr Virus Nuclear AntigensHistocompatibility Antigens Class IOligonucleotides, AntisensePurinesRNA, Messenger

Identifiers

PMID18591662
PMCPMC2453702
OpenAlexW1986057386

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.