Evidence map›Paper›PMID 18591417›Full record

ArticleThe Journal of general physiology2008

Mechanosensitive channel MscS in the open state: modeling of the transition, explicit simulations, and experimental measurements of conductance.

Andriy Anishkin, Kishore Kamaraju, Sergei Sukharev

Abstract read
In one paragraph

Article in The Journal of general physiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
  2. Review
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  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. The role of lipids in mechanosensation.Nature structural & molecular biology · 2015
    Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Andriy AnishkinDepartment of Biology, University of Maryland, College Park, MD 20742, USA.
Kishore Kamaraju
Sergei Sukharev

Funding

Functional Cycle of a Mechanosensitive ChannelR01GM075225 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI SUKHAREV, SERGEI I · 2006 to 2009
$1.1M
NIGMS NIH HHS R01 GM075225NIGMS NIH HHS R01GM075225
6 · The paper itself

Abstract

Mechanosensitive channels of small conductance (MscS) are ubiquitous turgor pressure regulators found in many walled cells and some intracellular organelles. Escherichia coli MscS acting as a tension-activated osmolyte release valve shows a nonsaturable conductance (1.2 nS in a 39 mS/cm electrolyte) and weak preference for anions. Pursuing the transition pathways in this channel, we applied the extrapolated motion protocol (cycles of displacements, minimizations, and short simulations) to the previously generated compact resting conformation of MscS. We observed tilting and straightening of the kinked pore-forming TM3 helices during the barrel expansion. Extended all-atom simulations confirmed the stability of the open conformation in the bilayer. A 53 degrees spontaneous axial rotation of TM3s observed after equilibration increased the width and polarity of the pore allowing for stable voltage-independent hydration and presence of both cations and anions throughout the pore. The resultant open state, characterized by a pore 1.6 nm wide, satisfied the experimental conductance and in-plane expansion. Applied transmembrane electric field (+/-100 to +/-200 mV) in simulations produced a flow of both K(+) and Cl(-), with Cl(-) current dominating at higher voltages. Electroosmotic water flux strongly correlated with the chloride current (approximately 8 waters per Cl(-)). The selectivity and rectification were in agreement with the experimental measurements performed in the same range of voltages. Among the charged residues surrounding the pore, only K169 was found to contribute noticeably in the rectification. We conclude that (a) the barrel expansion involving tilting, straightening, and rotation of TM3s provides the geometry and electrostatics that accounts for the conductive properties of the open pore; (b) the observed regimen of ion passage through the pore is similar to electrodiffusion, thus macroscopic estimations closely approximate the experimental and molecular dynamics-simulated conductances; (c) increased interaction of the opposing ionic fluxes at higher voltages may result in selectivities stronger than measured near the reversal potential.

Indexed as

Computer SimulationModels, MolecularChlorineDiffusionElectric ConductivityElectrophysiologyEscherichia coli ProteinsIon Channel GatingIon ChannelsIonsLipid BilayersMembrane PotentialsPhosphatidylcholinesPotassiumProtein ConformationStatic Electricity1-palmitoyl-2-oleoylphosphatidylcholineChlorineEscherichia coli ProteinsIon ChannelsIonsLipid BilayersMscS protein, E coliPhosphatidylcholinesPotassiumWater

Identifiers

PMID18591417
PMCPMC2442180

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LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.