Evidence map›Paper›PMID 18591382›Full record

ArticleBlood2008

A novel polymorphism of the human CD40 receptor with enhanced function.

Anna L Peters, Robert M Plenge, Robert R Graham, David M Altshuler, Kathy L Moser, Patrick M Gaffney, Gail A Bishop

Open access · hybridAbstract read
In one paragraph

Article in Blood, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Review
  8. Review
  9. Autoimmunity and the gut.Autoimmune diseases · 2014
    Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Anna L PetersMedical Scientist Training Program, University of Iowa, Iowa City, IA 52242, USA.
Robert M Plenge
Robert R Graham
David M Altshuler
Kathy L Moser
Patrick M Gaffney
Gail A Bishop
Broad Institute · USUniversity of Minnesota · USIowa City VA Medical Center · USUniversity of Iowa · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007337 · NIGMS · UNIVERSITY OF IOWA · PI GEYER, PAMELA K., LENTZ, STEVEN R · 1985 to 2020
$15.9M
Mechanisms of Alteration of B Lymphocyte Function by LMP1R01CA099997 · NCI · UNIVERSITY OF IOWA · PI BISHOP, GAIL A. · 2003 to 2013
$3.2M
Comprehensive Candidate Pathway Analysis in SLER01AI063274 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI GAFFNEY, PATRICK M · 2005 to 2009
$3.1M
The Roles of TRAF3 in Lymphocyte SignalingR01AI028847 · NIAID · UNIVERSITY OF IOWA · PI BISHOP, GAIL A. · 1996 to 2011
$3.1M
TRAFs and Rafts in CD40 Signaling to B LymphocytesR01AI049993 · NIAID · UNIVERSITY OF IOWA · PI BISHOP, GAIL A. · 2001 to 2009
$2.7M
Training in Molecular Virology, Viral Pathogenesis and Viral VectorsT32AI007533 · NIAID · UNIVERSITY OF IOWA · PI Stanley Perlman · 1998 to 2026
$2.5M
Genetic /functional studies of CD40 P227A polymorphismR01AR052125 · NIAMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI GAFFNEY, PATRICK M · 2005 to 2008
$1.2M
Comprehensive Candidate Pathway Analysis in SLER56AI063274 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GAFFNEY, PATRICK M, MONTGOMERY, COURTNEY · 2012 to 2012
$787k
Regulation of lymphocyte receptor signaling by TRAF interactionsR56AI049993 · NIAID · UNIVERSITY OF IOWA · PI BISHOP, GAIL A. · 2010 to 2010
$374k
Understanding TRAF3-mediated regulation of T lymphocyte functionsR56AI028847 · NIAID · UNIVERSITY OF IOWA · PI BISHOP, GAIL A. · 2013 to 2013
$227k
REGULATION OF CLASS II--MEDIATED B CELL DIFFERENTIATIONR29AI028847 · NIAID · UNIVERSITY OF IOWA · PI BISHOP, GAIL A. · 1990 to 1994
–
NCI NIH HHS CA099997NCI NIH HHS R01 CA099997NIAID NIH HHS AI063274NIAID NIH HHS AI28847NIAID NIH HHS AI49993NIAID NIH HHS R01 AI028847NIAID NIH HHS R01 AI049993NIAID NIH HHS R01 AI063274NIAID NIH HHS R56 AI028847NIAID NIH HHS R56 AI049993NIAID NIH HHS R56 AI063274NIAID NIH HHS T32 AI007533NIAMS NIH HHS AR052125NIAMS NIH HHS R01 AR052125NIGMS NIH HHS T32 GM007337
6 · The paper itself

Abstract

CD40 signaling is critical for innate and adaptive immunity against pathogens, and the cytoplasmic domain of CD40 is highly conserved both within and between species. A novel missense single nucleotide polymorphism (SNP) in the cytoplasmic domain of CD40 at position 227 (P227A) was identified, which resides on a conserved ancestral haplotype highly enriched in persons of Mexican and South American descent. Functional studies indicated that signaling via human (h) CD40-P227A stably expressed in several B-cell lines led to increased phosphorylation of c-Jun, increased secretion of the pro-inflammatory cytokines interleukin (IL)-6 and TNF-alpha, and increased Ig production, compared with wild-type hCD40. Cooperation between hCD40-P227A signaling and B-cell receptor (BCR)- or Toll-like receptor 9 (TLR9)-mediated signaling was also enhanced, resulting in elevated and synergistic production of IL-6 and Ig. We have thus identified a novel genetic variant of hCD40 with a gain-of-function immune phenotype.

Indexed as

Polymorphism, Single NucleotideAmino Acid SubstitutionAnimalsB-LymphocytesCD40 AntigensCell LineGene FrequencyHumansImmunoglobulin MInterleukin-6JNK Mitogen-Activated Protein KinasesMicePhenotypeProtein Structure, TertiaryRecombinant ProteinsSignal TransductionCD40 AntigensIL6 protein, humanImmunoglobulin MInterleukin-6JNK Mitogen-Activated Protein KinasesRecombinant ProteinsTLR9 protein, humanToll-Like Receptor 9Tumor Necrosis Factor-alphaTumor Necrosis Factor Receptor-Associated Peptides and Proteins

Identifiers

PMID18591382
PMCPMC2518891
OpenAlexW2082210523

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.