Evidence map›Paper›PMID 18588334›Full record

ArticleThe journal of physical chemistry. B2008

Finite-element model of interaction between fungal polysaccharide and monoclonal antibody in the capsule of Cryptococcus neoformans.

Vineet Rakesh, Andrew D Schweitzer, Oscar Zaragoza, Ruth Bryan, Kevin Wong, Ashim Datta, Arturo Casadevall, Ekaterina Dadachova

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. The capsule of the fungal pathogen Cryptococcus neoformans.Advances in applied microbiology · 2009
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Vineet RakeshDepartment of Biological and Environmental Engineering, Cornell University, Ithaca, New York 14853, USA.
Andrew D Schweitzer
Oscar Zaragoza
Ruth Bryan
Kevin Wong
Ashim Datta
Arturo Casadevall
Ekaterina Dadachova
Instituto de Salud Carlos III · ESAlbert Einstein College of Medicine · USCornell University · USHoward Hughes Medical Institute · USIcahn School of Medicine at Mount Sinai · US

Funding

Synergy of Host Defense Mechanisms in the LungR01HL059842 · NHLBI · YESHIVA UNIVERSITY · PI CASADEVALL, ARTURO · 1997 to 2023
$7.4M
Biology of Fungal MelaninR01AI052733 · NIAID · YESHIVA UNIVERSITY · PI CASADEVALL, ARTURO · 2003 to 2019
$6.6M
PROTECTIVE ANTIBODIES FOR CRYPTOCOCCAL INFECTIONSR01AI033774 · NIAID · YESHIVA UNIVERSITY · PI CASADEVALL, ARTURO · 1994 to 2014
$5.6M
Molecular Characterization of C. neoformans AntibodiesR37AI033142 · NIAID · JOHNS HOPKINS UNIVERSITY · PI CASADEVALL, ARTURO · 2007 to 2016
$3.9M
Interaction of AIDS-associated microbes with radiationR01AI060507 · NIAID · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI DADACHOVA, EKATERINA · 2005 to 2009
$1.8M
MOLECULAR CHARACTERIZATION OF C NEOFORMANS ANTIBODIESR01AI033142 · NIAID · YESHIVA UNIVERSITY · PI CASADEVALL, ARTURO · 1994 to 2006
$1.7M
Interaction of AIDS-associated microbes with radiationR56AI060507 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI DADACHOVA, EKATERINA · 2010 to 2010
$415k
Howard Hughes Medical InstituteNHLBI NIH HHS HL59842NHLBI NIH HHS R01 HL059842NIAID NIH HHS AI33142NIAID NIH HHS AI33774NIAID NIH HHS AI52733NIAID NIH HHS AI60507NIAID NIH HHS R01 AI033142NIAID NIH HHS R01 AI033774NIAID NIH HHS R01 AI052733NIAID NIH HHS R01 AI060507NIAID NIH HHS R37 AI033142NIAID NIH HHS R56 AI060507
6 · The paper itself

Abstract

Many microorganisms such as bacteria and fungi possess so-called capsules made of polysaccharides which protect these microorganisms from environmental insults and host immune defenses. The polysaccharide capsule of Cryptococcus neoformans, a human pathogenic yeast, is capable of self-assembly, composed mostly of glucuronoxylomannan (GXM), a polysaccharide with a molecular weight of approximately 2,000,000, and has several layers with different densities. The objective of this study was to model pore-hindered diffusion and binding of the GXM-specific antibody within the C. neoformans capsule. Using the finite-element method (FEM), we created a model which represents the in vivo binding of a GXM-specific antibody to a C. neoformans cell taking into account the intravenous infusion time of antibody, antibody diffusion through capsular pores, and Michaelis-Menten kinetics of antibody binding to capsular GXM. The model predicted rapid diffusion of antibody to all regions of the capsule where the pore size was greater than the Stokes diameter of the antibody. Binding occurred primarily at intermediate regions of the capsule. The GXM concentration in each capsular region was the principal determinant of the steady-state antibody-GXM complex concentration, while the forward binding rate constant influenced the rate of complex formation in each region. The concentration profiles predicted by the model closely matched experimental immunofluorescence data. Inclusion of different antibody isotypes (IgG, IgA, and IgM) into the modeling algorithm resulted in similar complex formation in the outer capsular regions, but different depths of binding at the inner regions. These results have implications for the development of new antibody-based therapies.

Indexed as

Antigen-Antibody ReactionsFinite Element AnalysisAlgorithmsAntibodies, FungalAntibodies, MonoclonalCarbohydrate SequenceCryptococcus neoformansHumansImmunoglobulin AImmunoglobulin GImmunoglobulin MKineticsModels, BiologicalMolecular Sequence DataMolecular WeightPolysaccharidesAntibodies, FungalAntibodies, MonoclonalglucuronoxylomannanImmunoglobulin AImmunoglobulin GImmunoglobulin MPolysaccharidesPolysaccharides, Bacterial

Identifiers

PMID18588334
PMCPMC2680236
OpenAlexW2062218415

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.