Evidence map›Paper›PMID 18584949›Full record

ArticleMolecular and cellular endocrinology2008

Conservation of inter-protein binding sites in RUSH and RFBP, an ATP11B isoform.

Aveline Hewetson, Amber E Wright-Pastusek, Rebecca A Helmer, Kerrie A Wesley, Beverly S Chilton

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular endocrinology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Aveline HewetsonDepartment of Cell Biology & Biochemistry, Texas Tech University Health Sciences Center, 3601 4th Street, MS6540, Lubbock, TX 79430-6540, United States.
Amber E Wright-Pastusek
Rebecca A Helmer
Kerrie A Wesley
Beverly S Chilton
Texas Tech University Health Sciences Center · USRebecca Sealy Hospital · US

Funding

PROLACTIN REGULATES THE UTERINE RESPONSE TO PROGESTERONER01HD029457 · NICHD · TEXAS TECH UNIVERSITY HEALTH SCIS CENTER · PI CHILTON, BEVERLY S. · 1994 to 2008
$2.4M
NICHD NIH HHS HD29457NICHD NIH HHS R01 HD029457
6 · The paper itself

Abstract

Isoforms of RUSH interact with a RING-finger binding protein (RFBP), which is a splice variant of the Type IV P-type ATPase, ATP11B. Splice arrays and RT-PCR showed that although most splice variants in RUSH and ATP11B are conserved in human and rabbit, the RFBP isoform is specific to rabbit. Interactions between the discontinuous PVITHC-HAKCPL sequence in the RING-domain of RUSH and the KVIRLIKIS sequence in the catalytic loop of RFBP were first identified with pull-down assays. Fine mapping involved probing CLIPS-constrained RING peptides with GST-tagged KVIRLIKIS. When the companion site in RFBP was fine mapped by replacement analysis with MBP-tagged RING, a four-fold increase in binding was noted for the KVIRLDKIS mutant. Direct comparison of splicing events in the RUSH and ATP11B genes between human and rabbit shows high structural stability in these protein interactions sites, which are 100% conserved in all mammalian orthologs.

Indexed as

Conserved SequenceAdenosine TriphosphatasesAmino Acid SequenceAnimalsATPase Inhibitory ProteinATP-Binding Cassette TransportersBinding SitesCarrier ProteinsDNA-Binding ProteinsExonsFemaleHumansImmunoprecipitationMolecular Sequence DataOligonucleotide Array Sequence AnalysisPeptidesAdenosine TriphosphatasesATPase Inhibitory ProteinATP-Binding Cassette TransportersCarrier ProteinsDNA-Binding ProteinsHLTF protein, humanPeptidesProtein IsoformsProteinsRING-finger binding protein, Oryctolagus cuniculusSMARCA3 protein, Oryctolagus cuniculusTranscription Factors

Identifiers

PMID18584949
PMCPMC2575751
OpenAlexW2068500368

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.