Evidence map›Paper›PMID 18582059›Full record

ArticleJournal of the American Chemical Society2008

Inner-sphere mechanism for molecular oxygen reduction catalyzed by copper amine oxidases.

Arnab Mukherjee, Valeriy V Smirnov, Michael P Lanci, Doreen E Brown, Eric M Shepard, David M Dooley, Justine P Roth

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Review
  3. Molecular mechanism of the chitinolytic peroxygenase reaction.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  4. Article
  5. Co(II) is not oxidized during turnover in the copper amine oxidase from Hansenula polymorpha.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2019
    Article
  6. Article
  7. Article
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  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Cobalt substitution supports an inner-sphere electron transfer mechanism for oxygen reduction in pea seedling amine oxidase.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2012
    Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Arnab MukherjeeDepartment of Chemistry, Johns Hopkins University, 3400 North Charles St., Baltimore, Maryland 21218, USA.
Valeriy V Smirnov
Michael P Lanci
Doreen E Brown
Eric M Shepard
David M Dooley
Justine P Roth
Johns Hopkins University · USMontana State University · US

Funding

Structures, Mechanisms, and Biogenesis of Amine OxidasesR01GM027659 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI DOOLEY, DAVID M. · 1985 to 2009
$2.9M
NIGMS NIH HHS GM 27659NIGMS NIH HHS R01 GM027659
6 · The paper itself

Abstract

Copper and topaquinone (TPQ) containing amine oxidases utilize O2 for the metabolism of biogenic amines while concomitantly generating H2O2 for use by the cell. The mechanism of O2 reduction has been the subject of long-standing debate due to the obscuring influence of a proton-coupled electron transfer between the tyrosine-derived TPQ and copper, a rapidly established equilibrium precluding assignment of the enzyme in its reactive form. Here, we show that substrate-reduced pea seedling amine oxidase (PSAO) exists predominantly in the Cu(I), TPQ semiquinone state. A new mechanistic proposal for O2 reduction is advanced on the basis of thermodynamic considerations together with kinetic studies (at varying pH, temperature, and viscosity), the identification of steady-state intermediates, and the analysis of competitive oxygen kinetic isotope effects, (18)O KIEs, [kcat/KM((16,16)O2)]/[kcat/KM((16,18)O2)]. The (18)O KIE = 1.0136 +/- 0.0013 at pH 7.2 is independent of temperature from 5 degrees C to 47 degrees C and insignificantly changed to 1.0122 +/- 0.0020 upon raising the pH to 9, thus indicating the absence of kinetic complexity. Using density functional methods, the effect is found to be precisely in the range expected for reversible O2 binding to Cu(I) to afford a superoxide, [Cu(II)(eta(1)-O2)(-I)](+), intermediate. Electron transfer from the TPQ semiquinone follows in the first irreversible step to form a peroxide, Cu(II)(eta(1)-O2)(-II), intermediate driving the reduction of O2. The similar (18)O KIEs reported for copper amine oxidases from other sources raise the possibility that all enzymes react by related inner-sphere mechanisms although additional experiments are needed to test this proposal.

Indexed as

Amine Oxidase (Copper-Containing)BenzylaminesCatalysisDeuterium Exchange MeasurementHydrogen-Ion ConcentrationHydrogen PeroxideKineticsModels, MolecularOxidation-ReductionOxygenOxygen IsotopesPutrescineSpectrophotometryThermodynamicsViscosityAmine Oxidase (Copper-Containing)benzylamineBenzylaminesHydrogen PeroxideOxygenOxygen IsotopesPutrescine

Identifiers

PMID18582059
PMCPMC2574554
OpenAlexW2011656574

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.