Evidence map›Paper›PMID 18579790›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Seminaphthofluorones are a family of water-soluble, low molecular weight, NIR-emitting fluorophores.

Youjun Yang, Mark Lowry, Xiangyang Xu, Jorge O Escobedo, Martha Sibrian-Vazquez, Lisa Wong, Corin M Schowalter, Timothy J Jensen, Frank R Fronczek, Isiah M Warner and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Hybrid of Indolizine and Merocyanine-A New Class of Organelle-Specific Dyes.Angewandte Chemie (International ed. in English) · 2025
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. How an Eight-Membered Ring Alters the Rhodamine Chromophore.The Journal of organic chemistry · 2020
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Progress toward red and near-infrared (NIR) emitting saccharide sensors.Pure and applied chemistry. Chimie pure et appliquee · 2012
    Article
  14. Near infrared fluorescence for image-guided surgery.Quantitative imaging in medicine and surgery · 2012
    Article
  15. Water-soluble, deep-red fluorescent squaraine rotaxanes.Organic & biomolecular chemistry · 2012
    Article
  16. Field effects induce bathochromic shifts in xanthene dyes.Journal of the American Chemical Society · 2012
    Article
  17. Near-infrared molecular probes for in vivo imaging.Current protocols in cytometry · 2012
    Article
  18. NIR dyes for bioimaging applications.Current opinion in chemical biology · 2010
    Review
  19. Article
  20. Discovery and early development of squaraine rotaxanes.Chemical communications (Cambridge, England) · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Youjun YangDepartment of Chemistry, Louisiana State University, Baton Rouge, LA 70803, USA.
Mark Lowry
Xiangyang Xu
Jorge O Escobedo
Martha Sibrian-Vazquez
Lisa Wong
Corin M Schowalter
Timothy J Jensen
Frank R Fronczek
Isiah M Warner
Robert M Strongin

Funding

Synthesis and Study of Novel Sensing AgentsR01EB002044 · NIBIB · PORTLAND STATE UNIVERSITY · PI STRONGIN, ROBERT M · 2003 to 2010
$1.6M
NIBIB NIH HHS R01 EB002044
6 · The paper itself

Abstract

A readily accessible new class of near infrared (NIR) molecular probes has been synthesized and evaluated. Specific fluorophores in this unique xanthene based regioisomeric seminaphthofluorone dye series exhibit a combination of desirable characteristics including (i) low molecular weight (339 amu), (ii) aqueous solubility, and (iii) dual excitation and emission from their fluorescent neutral and anionic forms. Importantly, systematic changes in the regiochemistry of benzannulation and the ionizable moieties afford (iv) tunable deep-red to NIR emission from anionic species and (v) enhanced Stokes shifts. Anionic SNAFR-6, exhibiting an unusually large Stokes shift of approximately 200 nm (5,014 cm(-1)) in aqueous buffer, embodies an unprecedented fluorophore that emits NIR fluorescence when excited in the blue/green wavelength region. The successful use of SNAFR-6 in cellular imaging studies demonstrates proof-of-concept that this class of dyes possesses photophysical characteristics that allow their use in practical applications. Notably, each of the new fluorophores described is a minimal template structure for evaluation of their basic spectral properties, which may be further functionalized and optimized yielding concomitant improvements in their photophysical properties.

Identifiers

PMID18579790
PMCPMC2440362

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.