Evidence map›Paper›PMID 18579769›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Identification of the TFII-I family target genes in the vertebrate genome.

Nyam-Osor Chimge, Aleksandr V Makeyev, Frank H Ruddle, Dashzeveg Bayarsaihan

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. International journal of molecular sciences · 2025
    Review
  3. Article
  4. Novel CDKL5 targets identified in human iPSC-derived neurons.Cellular and molecular life sciences : CMLS · 2024
    Article
  5. Article
  6. Science advances · 2023
    Article
  7. Article
  8. Williams syndrome.Nature reviews. Disease primers · 2021
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Evolution of general transcription factors.Journal of molecular evolution · 2013
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Nyam-Osor ChimgeDepartment of Molecular, Cellular, and Craniofacial Biology, Birth Defects Center, University of Louisville, 501 South Preston Street, Louisville, KY 40292, USA.
Aleksandr V Makeyev
Frank H Ruddle
Dashzeveg Bayarsaihan
University of Louisville · USWhitney Museum of American Art · US

Funding

ROLE OF TFII-I IN CRANIOFACIAL DEVELOPMENTR01DE017205 · NIDCR · UNIVERSITY OF LOUISVILLE · PI BAYARSAIHAN, DASHZEVEG · 2006 to 2009
$1.5M
Role of TFII-I in Craniofacial DevelopmentK02DE018412 · NIDCR · UNIVERSITY OF LOUISVILLE · PI BAYARSAIHAN, DASHZEVEG · 2007 to 2011
$477k
NIDCR NIH HHS K02 DE018412NIDCR NIH HHS K02 DE18412NIDCR NIH HHS R01 DE017205
6 · The paper itself

Abstract

GTF2I and GTF2IRD1 encode members of the TFII-I transcription factor family and are prime candidates in the Williams syndrome, a complex neurodevelopmental disorder. Our previous expression microarray studies implicated TFII-I proteins in the regulation of a number of genes critical in various aspects of cell physiology. Here, we combined bioinformatics and microarray results to identify TFII-I downstream targets in the vertebrate genome. These results were validated by chromatin immunoprecipitation and siRNA analysis. The collected evidence revealed the complexity of TFII-I-mediated processes that involve distinct regulatory networks. Altogether, these results lead to a better understanding of specific molecular events, some of which may be responsible for the Williams syndrome phenotype.

Indexed as

AnimalsBase SequenceComputational BiologyConsensus SequenceFibroblastsGene Expression RegulationGenomeHumansMiceMolecular Sequence DataMuscle ProteinsNuclear ProteinsOligonucleotide Array Sequence AnalysisPromoter Regions, GeneticProtein BindingReproducibility of ResultsGTF2I protein, humanGtf2i protein, mouseGtf2ird1 protein, mouseMuscle ProteinsNuclear ProteinsRNA, Small InterferingTrans-ActivatorsTranscription Factors, TFII

Identifiers

PMID18579769
PMCPMC2449355
OpenAlexW2059722331

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.