Evidence map›Paper›PMID 18574244›Full record

ArticleThe Journal of biological chemistry2008

A flexible template boundary element in the RNA subunit of fission yeast telomerase.

Jessica A Box, Jeremy T Bunch, David C Zappulla, Earl F Glynn, Peter Baumann

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 47 citations in OpenAlex.

  1. Molecular and cellular biology · 2026
    Article
  2. Article
  3. Review
  4. Structural biology of telomeres and telomerase.Cellular and molecular life sciences : CMLS · 2020
    Review
  5. New perspectives on telomerase RNA structure and function.Wiley interdisciplinary reviews. RNA · 2018
    Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Telomerase RNA stem terminus element affects template boundary element function, telomere sequence, and shelterin binding.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  14. Article
  15. Telomere les(i/s)ons from a telomerase RNA mutant.Cell cycle (Georgetown, Tex.) · 2015
    Review
  16. Article
  17. Article
  18. Finding the end: recruitment of telomerase to telomeres.Nature reviews. Molecular cell biology · 2013
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jessica A BoxStowers Institute for Medical Research, 1000 East 50th Street, Kansas City, MO 64110, USA.
Jeremy T Bunch
David C Zappulla
Earl F Glynn
Peter Baumann
Stowers Institute for Medical Research · USUniversity of Colorado Boulder · US

Funding

Investigating Telomerase Mechanism by Exploring the RNAR00GM080400 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI ZAPPULLA, DAVID CLIFFORD · 2008 to 2010
$745k
Investigating Telomerase Mechanism by Exploring the RNAK99GM080400 · NIGMS · UNIVERSITY OF COLORADO · PI ZAPPULLA, DAVID CLIFFORD · 2007 to 2008
$106k
NIGMS NIH HHS K99 GM080400NIGMS NIH HHS K99 GM 80400NIGMS NIH HHS R00 GM080400
6 · The paper itself

Abstract

Telomerase adds telomeric repeat sequences to chromosome ends using a short region of its RNA subunit as a template. Telomerase RNA subunits are phylogenetically highly divergent, and different strategies have evolved to demarcate the boundary of the template region. The recent identification of the gene encoding telomerase RNA in the fission yeast Schizosaccharomyces pombe (ter1+) has opened the door for structure-function analyses in a model that shares many features with the telomere maintenance machinery of higher eukaryotes. Here we describe a structural element in TER1 that defines the 5' boundary of the template. Disruption of a predicted long range base pairing interaction between template-adjacent nucleotides and a sequence further upstream resulted in reverse transcription beyond the template region and caused telomere shortening. Normal telomere length was restored by combining complementary nucleotide substitutions in both elements, showing that base pairing, not a specific sequence, limits reverse transcription beyond the template. The template boundary described here resembles that of budding yeasts and some mammalian telomerases. However, unlike any previously characterized boundary element, part of the paired region overlaps with the template itself, thus necessitating disruption of these interactions during most reverse transcription cycles. We show that changes in the paired region directly affect the length of individual telomeric repeat units. Our data further illustrate that marginal alignment of the telomeric 3' end with RNA sequences downstream of the template is responsible for primer slippage, causing incorporation of strings of guanosines at the start of a subset of repeats.

Indexed as

Models, Molecular3' Flanking RegionDNA-Binding ProteinsDNA, FungalPhylogenyRepetitive Sequences, Nucleic AcidReverse TranscriptionRNARNA, FungalSchizosaccharomycesSchizosaccharomyces pombe ProteinsStructure-Activity RelationshipTelomeraseTelomereDNA-Binding ProteinsDNA, FungalRNARNA, FungalSchizosaccharomyces pombe ProteinsTelomeraseTer1 telomerase subunit, S pombe

Identifiers

PMID18574244
PMCPMC2527122
OpenAlexW2012337056

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.